SCN Proteipedia

Hg_chrom9_TN10mRNA_17427

Organism: Heterodera glycines Gene Locus: chr9:4168249-4174004 Feature type: polypeptide

Protein Sequence

Length: 1,101

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.162	1.373	0.809	0.752	0.984	1.421	0.551	1.953	1.312	1.424	0.757	1.763	0.858	0.978	0.797	0.83	0.774	0.867	0.629	1.149	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16466	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.870

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	KKLVSIVEDQLQKKRLP	—	—	—	—	—	—	0.000	—	—	0.560	0.302	0.048	0.606	0.256	0.215	0.291	0.134	0.288	0.071

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012885	1.000	1.000	Hsc_gene_18629.t1	Hsc_gene_18629.t1	—	O18158.2 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase [Caenorhabditis elegans]	KAF7639384.1 TPR_REGION domain-containing protein, partial [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.958\|GO:0009987_0.901\|GO:0003674_0.881\|GO:0008152_0.822\|GO:0005575_0.806\|GO:0110165_0.801\|GO:0044238_0.795\|GO:0003824_0.791\|GO:0044237_0.785\|GO:0009058_0.771\|GO:0043170_0.753\|GO:0044249_0.744\|GO:0032501_0.733\|GO:0019538_0.729\|GO:0005622_0.727\|GO:0009059_0.723\|GO:0016020_0.718\|GO:0016740_0.707\|GO:0043412_0.701\|GO:0036211_0.698\|GO:1901135_0.695\|GO:0050896_0.692\|GO:1901137_0.678\|GO:0009100_0.676\|GO:0070085_0.676\|GO:0005737_0.675\|GO:0006486_0.675\|GO:0009101_0.675\|GO:0043413_0.675\|GO:0006493_0.670\|GO:0016757_0.658\|GO:0043226_0.655\|GO:0043229_0.642\|GO:0065007_0.632\|GO:0043227_0.622\|GO:0050789_0.613\|GO:0043231_0.609\|GO:0140096_0.595\|GO:0016758_0.565\|GO:0008194_0.557\|GO:0008375_0.557\|GO:0032502_0.555\|GO:0048856_0.555\|GO:0007275_0.532\|GO:0048519_0.532\|GO:0097363_0.529	IPR011990+74-460_77-375_359-972_479-589+\|IPR019734+71-104_105-138_139-172_173-206_174-205_207-240_213-239_241-274_275-308_309-342_343-376_377-410_411-444_445-478_479-512+\|IPR029489+526-1072+	SM00028+71-104_105-138_139-172_173-206_207-240_241-274_275-308_309-342_343-376_377-410_411-444_445-478_479-512+	PF00515+139-172_241-274+Tetratricopeptide_repeat\|PF13181+174-205_213-239+Tetratricopeptide_repeat\|PF13374+377-407+Tetratricopeptide_repeat\|PF13414+318-357_421-459_490-521+TPR_repeat\|PF13844+526-1072+Glycosyl_transferase_family_41	G3DSA:1.25.40.10:FF:000013+479-589+UDP-N-acetylglucosamine--peptide_N-acetylglucosaminyltransferase_110_kDa_subunit\|G3DSA:1.25.40.10:FF:000019+74-460+UDP-N-acetylglucosamine--peptide_N-acetylglucosaminyltransferase_110_kDa_subunit\|G3DSA:3.40.50.11380:FF:000001+607-776+UDP-N-acetylglucosamine--peptide_N-acetylglucosaminyltransferase_110_kDa_subunit\|G3DSA:3.40.50.2000:FF:000012+897-1060+UDP-N-acetylglucosamine--peptide_N-acetylglucosaminyltransferase_110_kDa_subunit	PTHR44366+63-1095+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-51	1.000	52-1101	1w3b_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.568	123170.990	6.714	5.500	23.161	11.717	45.141	54.859	12.807	10.354	48.501

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	3191.065	4863.485	4295.746	3615.126	3513.633	4195.311	4161.706	3678.158	2911.451	1156.136	1908.414

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.408	-0.565	-0.141	—	0.271	—	-0.294	0.320	—	—	—	—	—

No JSON data available for plots.

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