Hg_chrom9_TN10mRNA_17429
Organism: Heterodera glycines Gene Locus: chr9:4183881-4186089 Feature type: polypeptideProtein Sequence
Length: 701
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.348 | 0.995 | 0.597 | 0.0 | 2.52 | 1.244 | 0.9 | 1.07 | 0.888 | 0.405 | 1.859 | 1.51 | 0.476 | 1.18 | 2.766 | 0.999 | 0.889 | 0.389 | 0.549 | 0.252 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16468
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRHRKRGTKGRKRRTEK,RKRRTEKERHSKKKKPN,KRRGMTKRKKEERKKEP,RRIRRIQIQKRHRKRGTK,KKREKKKKLMKPYKRRGM,KRKEKKRHPGGKRKEKEK,KKQKENMQSKVPQRERKV,RKVTFREQSETPIRRRDG,RRISVNTLKGIKGKKLRRV,RRIQIQKRHRKRGTKGRKR,KRGTKGRKRRTEKERHSKK,KKKKPNNGRKMKKREKKKK,KKKPNNGRKMKKREKKKKL,KKPNNGRKMKKREKKKKLM,RKMKKREKKKKLMKPYKRR,KKKKLMKPYKRRGMTKRKK,KKKLMKPYKRRGMTKRKKE,KKLMKPYKRRGMTKRKKEE,KRKKEERKKEPTKRKEKKR,RKKEERKKEPTKRKEKKRH,KKEERKKEPTKRKEKKRHP,KKEPTKRKEKKRHPGGKRK,KKQTDREGRGVERKRERRP,ILKGSKRKKGMEEAADPKPQQWRRRDKWKKP
|
80-100
|
0.998
|
38-98
|
0.999
|
— | — |
0.000
|
— | — |
0.237
|
0.036
|
0.044
|
0.310
|
0.283
|
0.052
|
0.175
|
0.005
|
0.194
|
0.725
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012887
|
1.000
|
1.000
|
Hsc_gene_18626.t1
|
— | — | — | — |
MCC6803082
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
109-701
|
1.000
|
1-108
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
82216.910
|
10.820
|
59.500
|
46.362
|
5.421
|
67.903
|
32.097
|
27.960
|
18.402
|
39.230
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
skyblue3
|
2221.374
|
99.107
|
486.741
|
184.939
|
69.292
|
50.674
|
29.390
|
98.107
|
5511.179
|
5203.286
|
5335.240
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.065
|
0.763
|
-1.286
|
-1.447
|
-0.438
|
-0.777
|
0.850
|
-1.599
|
— |
-4.727
|
-6.013
|
— | — |
No JSON data available for plots.