Hg_chrom9_TN10mRNA_17431
Organism: Heterodera glycines Gene Locus: chr9:4188025-4190353 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.914 | 0.711 | 0.834 | 0.452 | 1.274 | 0.56 | 0.832 | 1.201 | 1.067 | 1.328 | 0.893 | 1.798 | 1.577 | 1.05 | 1.248 | 1.092 | 0.644 | 0.926 | 1.176 | 1.156 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16470
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
10-30
|
1.000
|
— | — | — | — |
0.000
|
— | — |
0.211
|
0.791
|
0.099
|
0.392
|
0.139
|
0.161
|
0.193
|
0.067
|
0.082
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012889
|
1.000
|
1.000
|
Hsc_gene_18624.t1
|
Hsc_gene_18624.t1
|
— |
Q17CS8.1 Kynurenine aminotransferase [Aedes aegypti]
|
KAF7639387.1 Aminotran_1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009058|GO:0030170
|
GO:0003674_0.739|GO:0008150_0.730|GO:0003824_0.593|GO:0009987_0.566|GO:0005575_0.541|GO:0110165_0.533|GO:0008152_0.529|GO:0016740_0.509
|
IPR004839+63-450+|IPR015421+76-334+|IPR015422+50-450+|IPR015424+38-454+|IPR051326+40-454+
|
— |
PF00155+63-450+Aminotransferase_class_I_and_II
|
G3DSA:3.40.640.10:FF:000024+76-331+Kynurenine--oxoglutarate_transaminase_3|G3DSA:3.90.1150.10:FF:000021+328-451+Kynurenine--oxoglutarate_transaminase_3
|
PTHR43807+40-454+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-458
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
51735.400
|
7.246
|
4.500
|
26.638
|
13.537
|
43.450
|
56.550
|
14.410
|
12.227
|
46.943
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
blue
|
3060.229
|
919.644
|
1383.641
|
1304.888
|
1570.055
|
1638.418
|
1669.318
|
1692.023
|
1682.829
|
8309.636
|
5469.576
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.359
|
0.368
|
— |
0.235
|
— | — | — | — |
-2.420
|
— |
-2.135
|
— | — |
No JSON data available for plots.