Hg_chrom9_TN10mRNA_17433
Organism: Heterodera glycines Gene Locus: chr9:4193080-4195803 Feature type: polypeptideProtein Sequence
Length: 628
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.5 | 1.37 | 0.869 | 0.659 | 1.221 | 1.552 | 0.455 | 1.672 | 1.38 | 1.721 | 0.796 | 0.749 | 1.371 | 0.949 | 1.3 | 1.16 | 0.731 | 0.796 | 0.735 | 0.609 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16472
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
31-51
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.257
|
0.154
|
0.014
|
0.693
|
0.172
|
0.369
|
0.401
|
0.288
|
0.205
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012891
|
1.000
|
1.000
|
Hsc_gene_18622.t1
|
Hsc_gene_18622.t1
|
— |
Q80XQ2.2 TBC1 domain family member 5 [Mus musculus]
|
KHN74040.1 TBC1 domain family member 5 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.925|GO:0110165_0.924|GO:0005622_0.870|GO:0005737_0.768|GO:0008150_0.743|GO:0016020_0.675|GO:0009987_0.644|GO:0003674_0.580|GO:0043226_0.537|GO:0043229_0.536|GO:0043227_0.505
|
IPR000195+28-354_31-326_35-249_262-350+|IPR035969+21-249_270-382+
|
SM00164+28-354+
|
PF00566+35-249_262-350+Rab-GTPase-TBC_domain
|
G3DSA:1.10.472.80:FF:000038+264-387+TBC1_domain_family_member_5|G3DSA:1.10.8.270:FF:000011+95-230+TBC1_domain_family_member_5
|
PTHR22957+21-362+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
555-628
|
1.000
|
1-554
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
72254.520
|
7.156
|
7.500
|
27.070
|
11.306
|
51.592
|
48.408
|
14.968
|
12.102
|
43.471
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
1609.372
|
1797.482
|
1177.361
|
1109.633
|
1058.975
|
908.621
|
1471.167
|
1190.945
|
1229.206
|
2851.277
|
2156.104
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.840
|
-0.833
|
— | — |
-0.207
|
0.704
|
0.286
|
0.445
|
— | — | — | — | — |
No JSON data available for plots.