SCN Proteipedia

Hg_chrom9_TN10mRNA_17437

Organism: Heterodera glycines Gene Locus: chr9:4204281-4212060 Feature type: polypeptide

Protein Sequence

Length: 973

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.956	0.789	0.691	0.213	1.456	1.897	0.93	1.285	1.051	1.056	0.638	1.632	0.714	1.384	1.154	1.365	1.045	0.794	0.316	0.272	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16475	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.916

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	KKGESGESEEEERRRQN	—	—	—	—	—	—	0.000	—	—	0.342	0.196	0.019	0.631	0.230	0.254	0.242	0.061	0.444	0.067

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004951	3.000	0.000	0.000	Hsc_gene_18618.t1;Hsc_gene_18618.t2;Hsc_gene_18618.t3;Hsc_gene_18618.t4	—	O17583.1 Protein lin-10 [Caenorhabditis elegans]	KAI6203642.1 Protein lin-10 [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.907\|GO:0110165_0.905\|GO:0008150_0.876\|GO:0009987_0.783\|GO:0005622_0.732\|GO:0065007_0.726\|GO:0050789_0.654\|GO:0016020_0.641\|GO:0005737_0.585\|GO:0003674_0.580\|GO:0005488_0.565\|GO:0030054_0.560\|GO:0071944_0.547\|GO:0051179_0.535\|GO:0032502_0.533\|GO:0048856_0.533\|GO:0005886_0.519\|GO:0032501_0.519	IPR001478+791-876_792-877_793-875_801-879_881-954_883-959_884-955_893-959+\|IPR006020+605-756_607-779_610-752+\|IPR011993+601-753+\|IPR036034+786-880_787-890_881-967_884-963+\|IPR051230+67-973+	SM00228+801-879_893-959+\|SM00462+605-756+	PF00595+793-875_884-955+PDZ_domain\|PF00640+610-752+Phosphotyrosine_interaction_domain_(PTB/PID)	G3DSA:2.30.29.30:FF:000207+601-753+Protein_CBR-LIN-10,_isoform_a\|G3DSA:2.30.42.10:FF:000007+880-967+Amyloid_beta_A4_protein-binding_family_A_member	PTHR12345+67-973+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-599	1.000	600-973	3suz_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.716	105618.230	5.564	-13.500	24.974	6.475	51.696	48.304	12.436	12.539	52.210

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	2875.749	2613.454	3277.411	1941.097	1329.994	1516.262	3566.010	2212.955	1028.077	5638.900	3662.833

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.097	-0.566	-0.647	-0.577	0.204	1.244	0.444	0.830	-2.558	—	—	—	—

No JSON data available for plots.

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