Hg_chrom9_TN10mRNA_17438
Organism: Heterodera glycines Gene Locus: chr9:4212210-4214726 Feature type: polypeptideProtein Sequence
Length: 499
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.165 | 1.352 | 0.437 | 0.76 | 1.336 | 1.696 | 1.002 | 0.701 | 0.713 | 1.029 | 0.729 | 1.886 | 1.058 | 0.963 | 1.309 | 1.031 | 1.051 | 0.638 | 0.925 | 0.589 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16476
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KGAHQTKKSAKSEHKTASKRSKKKKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.802
|
0.127
|
0.002
|
0.452
|
0.046
|
0.078
|
0.194
|
0.013
|
0.051
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004952
|
1.000
|
2.000
|
Hsc_gene_18617.t1;Hsc_gene_18617.t2
|
Hsc_gene_18617.t1;Hsc_gene_18617.t2
|
— | — |
KHN77210.1 Eyes absent -like protein 4 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004725
|
GO:0008150_0.948|GO:0032501_0.796|GO:0032502_0.781|GO:0048856_0.781|GO:0009653_0.700|GO:0005575_0.664|GO:0110165_0.658|GO:0009987_0.579|GO:0005622_0.564|GO:0016020_0.562|GO:0065007_0.551|GO:0050789_0.533|GO:0050794_0.513|GO:0043226_0.512
|
IPR028472+272-440+|IPR038102+128-442+
|
— | — | — |
PTHR10190+272-440+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-268;465-499
|
1.000
|
269-464
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
54854.800
|
8.115
|
7.500
|
23.046
|
8.417
|
49.098
|
50.902
|
12.625
|
10.421
|
51.703
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
364.414
|
1688.347
|
630.251
|
373.197
|
175.710
|
73.687
|
175.589
|
261.219
|
317.553
|
89.398
|
187.179
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.651
|
-2.315
|
-0.647
|
-1.121
|
-1.238
|
1.263
|
1.720
|
-0.430
|
— | — | — | — | — |
No JSON data available for plots.