Hg_chrom9_TN10mRNA_17440
Organism: Heterodera glycines Gene Locus: chr9:4216688-4222609 Feature type: polypeptideProtein Sequence
Length: 1,168
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 1.334 | 0.981 | 0.738 | 1.284 | 1.054 | 0.622 | 1.712 | 1.123 | 1.157 | 0.623 | 0.957 | 1.736 | 0.922 | 1.38 | 1.199 | 0.814 | 0.817 | 1.251 | 0.655 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16478
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RRIQEHNNNRRTFGRRRRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.505
|
0.129
|
0.023
|
0.166
|
0.468
|
0.095
|
0.211
|
0.021
|
0.123
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004954
|
2.000
|
1.000
|
Hsc_gene_18608.t1
|
Hsc_gene_18608.t1
|
— |
Q58CZ2.1 Protein-L-isoaspartate O-methyltransferase domain-containing protein 2 [Bos taurus]
|
KAI6194878.1 Mannosyltransferase [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004719|GO:0016757|GO:0036211
|
GO:0005575_0.827|GO:0003674_0.749|GO:0008150_0.745|GO:0110165_0.741|GO:0016020_0.643|GO:0005622_0.635|GO:0043226_0.524|GO:0071944_0.514
|
IPR000682+4-262+|IPR005599+677-857+|IPR029063+6-226_9-199+
|
— |
PF01135+10-219+Protein-L-isoaspartate(D-aspartate)_O-methyltransferase_(PCMT)|PF03901+677-857+Alg9-like_mannosyltransferase_family
|
— |
PTHR11579+4-262+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
310-625
|
2.000
|
1-309;626-1168
|
9omf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
133212.830
|
6.263
|
-6.000
|
27.397
|
13.527
|
50.599
|
49.401
|
14.298
|
13.099
|
48.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
yellow
|
405.798
|
203.077
|
135.559
|
129.247
|
120.360
|
118.148
|
311.925
|
284.014
|
366.385
|
1012.206
|
735.425
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.815
|
-0.789
|
— | — | — |
1.411
|
1.160
|
0.278
|
— | — |
-2.957
|
— | — |
No JSON data available for plots.