SCN Proteipedia

Hg_chrom9_TN10mRNA_17441

Organism: Heterodera glycines Gene Locus: chr9:4226435-4229843 Feature type: polypeptide

Protein Sequence

Length: 515

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.858	0.587	0.6	0.737	1.392	1.593	0.902	1.553	0.734	1.233	0.736	0.8	0.647	1.494	1.744	1.11	0.764	0.853	1.344	0.685	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16479	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	0.981

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRTKRKR,RRVPETEEDEEGQAQQRRR,RRRKKQQQQRLPPQRRVLPPRRPRV	—	—	—	—	—	—	0.000	—	—	0.711	0.075	0.056	0.467	0.150	0.054	0.067	0.026	0.097	0.061

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002554	2.000	2.000	Hsc_gene_18610.t1;Hsc_gene_18610.t2	Hsc_gene_18610.t1;Hsc_gene_18610.t2	—	Q96A44.1 SPRY domain-containing SOCS box protein 4 [Homo sapiens]	KAI1707158.1 SPRY domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.953\|GO:0005575_0.855\|GO:0110165_0.852\|GO:0008152_0.810\|GO:0043170_0.800\|GO:0044238_0.795\|GO:0005622_0.785\|GO:0019538_0.736\|GO:0009056_0.697\|GO:0009057_0.691\|GO:0030163_0.680\|GO:0005737_0.623\|GO:0003674_0.600\|GO:0065007_0.575\|GO:0050789_0.562\|GO:0005488_0.551\|GO:0009987_0.544\|GO:0006508_0.525\|GO:0051603_0.518\|GO:0006511_0.517\|GO:0019941_0.517\|GO:0043632_0.517	IPR001496+475-513_475-515_476-515+\|IPR001870+280-473+\|IPR003877+341-472_344-463+\|IPR013320+278-488+\|IPR043136+305-466+\|IPR050672+255-514+	SM00449+341-472+\|SM00969+476-515+	PF00622+344-463+SPRY_domain\|PF07525+475-513+SOCS_box	G3DSA:1.10.750.20:FF:000001+478-514+Ankyrin_repeat_and_SOCS_box_containing_1\|G3DSA:2.60.120.920:FF:000035+304-467+SplA/ryanodine_receptor_domain_and_SOCS_box_containing_1	PTHR12245+255-514+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-139;176-297	2.000	140-175;298-515	2fnj_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.873	57671.290	8.796	17.000	28.155	9.515	49.320	50.680	16.505	11.650	48.738

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	288.204	668.046	357.010	189.043	155.827	209.812	126.792	659.855	47.360	337.978	213.427

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.132	-1.959	-0.810	-0.311	0.445	-0.716	1.552	-2.238	—	—	—	—	—

No JSON data available for plots.

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