Hg_chrom9_TN10mRNA_17443
Organism: Heterodera glycines Gene Locus: chr9:4235129-4237213 Feature type: polypeptideProtein Sequence
Length: 419
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.777 | 0.999 | 0.824 | 0.741 | 1.074 | 1.652 | 0.767 | 2.506 | 1.167 | 1.193 | 0.579 | 1.264 | 1.923 | 0.734 | 1.315 | 0.886 | 1.174 | 0.615 | 0.367 | 0.842 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16481
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.330
|
0.383
|
0.020
|
0.601
|
0.097
|
0.378
|
0.391
|
0.062
|
0.356
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001463
|
2.000
|
3.000
|
Hsc_gene_18594.t1;Hsc_gene_18594.t2;Hsc_gene_18594.t3
|
Hsc_gene_18594.t1;Hsc_gene_18594.t2;Hsc_gene_18594.t3
|
— |
P47736.2 Rap1 GTPase-activating protein 1 [Homo sapiens]
|
KAI6196642.1 Rap-GAP domain-containing protein [Aphelenchoides besseyi];KAI6218256.1 Rap-GAP domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096|GO:0051056
|
GO:0008150_0.859|GO:0009987_0.796|GO:0005575_0.781|GO:0110165_0.773|GO:0065007_0.710|GO:0005622_0.678|GO:0003674_0.652|GO:0050789_0.631|GO:0050794_0.612|GO:0005488_0.596|GO:0016020_0.572|GO:0005737_0.548|GO:0005515_0.525
|
IPR000331+134-350_164-343+|IPR035974+34-360_147-331+|IPR050989+18-362+
|
— |
PF02145+164-343+Rap/ran-GAP|PF21022+39-144+Rap/Ran-GAP_protein_dimerization_domain
|
G3DSA:3.40.50.11210:FF:000001+143-330+Ral_GTPase-activating_protein_subunit_alpha-1_isoform_1
|
PTHR15711+18-362+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-419
|
1srq_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
47802.990
|
7.169
|
7.500
|
26.253
|
15.274
|
50.358
|
49.642
|
15.274
|
10.979
|
45.346
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
367.272
|
370.078
|
390.262
|
369.828
|
419.273
|
438.670
|
849.654
|
551.217
|
136.243
|
233.767
|
191.971
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.965
|
— |
0.768
|
— | — | — | — | — |
No JSON data available for plots.