Hg_chrom9_TN10mRNA_17444
Organism: Heterodera glycines Gene Locus: chr9:4239084-4241259 Feature type: polypeptideProtein Sequence
Length: 435
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.642 | 1.23 | 0.92 | 0.793 | 1.226 | 1.179 | 0.629 | 2.299 | 1.43 | 1.584 | 1.08 | 1.352 | 1.213 | 0.619 | 1.079 | 0.887 | 0.791 | 0.627 | 0.531 | 1.082 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16482
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
— |
KRHR,RKWFYNRIHLREKYR
|
— | — | — | — | — | — |
0.002
|
— | — |
0.338
|
0.743
|
0.029
|
0.544
|
0.053
|
0.056
|
0.027
|
0.217
|
0.036
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004955
|
2.000
|
1.000
|
Hsc_gene_18613.t1
|
Hsc_gene_18613.t1;Hsc_gene_18615.t1;Hsc_gene_18615.t2
|
— |
Q9H3H1.1 tRNA dimethylallyltransferase [Homo sapiens]
|
ALH44121.1 isopentenyltransferase [Heterodera glycines]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008033|GO:0052381
|
GO:0008150_0.904|GO:0009987_0.846|GO:0003674_0.819|GO:0008152_0.774|GO:0005575_0.756|GO:0110165_0.744|GO:0009058_0.743|GO:0044237_0.741|GO:0044249_0.717|GO:0005622_0.716|GO:0003824_0.709|GO:0016740_0.652|GO:0005737_0.647|GO:0016020_0.633|GO:0043226_0.625|GO:0043229_0.611|GO:0016765_0.603|GO:0043227_0.576|GO:0043231_0.553|GO:0044238_0.505
|
IPR018022+16-328_18-316+|IPR027417+16-255_17-140_18-354+|IPR036236+370-420+|IPR039657+16-357+
|
— |
PF01715+49-315+IPP_transferase
|
— |
PTHR11088+16-357+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-435
|
3a8t_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
50062.340
|
7.558
|
10.000
|
29.425
|
13.333
|
50.345
|
49.655
|
17.011
|
12.414
|
41.839
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1369.445
|
1826.045
|
1267.149
|
1040.005
|
998.860
|
965.784
|
737.096
|
1355.868
|
1882.037
|
1508.241
|
1668.439
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.756
|
-0.949
|
-0.177
|
— | — |
-0.381
|
0.384
|
-0.738
|
— | — | — | — | — |
No JSON data available for plots.