Hg_chrom9_TN10mRNA_17445
Organism: Heterodera glycines Gene Locus: chr9:4241370-4242759 Feature type: polypeptideProtein Sequence
Length: 308
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.906 | 1.208 | 0.413 | 0.672 | 1.028 | 1.832 | 0.966 | 1.623 | 0.866 | 1.316 | 0.689 | 1.337 | 1.804 | 0.749 | 0.795 | 0.974 | 1.011 | 0.885 | 0.5 | 1.146 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16483
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.349
|
0.638
|
0.280
|
0.361
|
0.240
|
0.227
|
0.201
|
0.149
|
0.226
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004956
|
2.000
|
1.000
|
Hsc_gene_18614.t1
|
Hsc_gene_18614.t1
|
— |
Q18090.1 Mitochondrial import receptor subunit TOM40 homolog [Caenorhabditis elegans]
|
KAH7717379.1 Protein TOMM-40 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005741|GO:0008320|GO:0030150|GO:0055085
|
GO:0005575_0.899|GO:0110165_0.807|GO:0005622_0.741|GO:0016020_0.721|GO:0005737_0.718|GO:0043226_0.680|GO:0043229_0.670|GO:0043227_0.660|GO:0043231_0.651
|
IPR023614+22-308+|IPR027246+24-302+|IPR037930+11-308_23-308+
|
— |
PF01459+24-302+Eukaryotic_porin
|
— |
PTHR10802+11-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25
|
1.000
|
26-308
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
34357.030
|
7.456
|
5.000
|
20.130
|
14.286
|
45.455
|
54.545
|
11.688
|
8.442
|
48.052
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1578.538
|
537.565
|
935.351
|
2005.715
|
2085.190
|
1439.161
|
1285.397
|
552.680
|
480.387
|
3230.416
|
2051.832
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.569
|
1.763
|
1.210
|
— |
-0.520
|
— |
-1.486
|
1.361
|
-2.867
|
2.212
|
— | — | — |
No JSON data available for plots.