Hg_chrom9_TN10mRNA_17447
Organism: Heterodera glycines Gene Locus: chr9:4249214-4250211 Feature type: polypeptideProtein Sequence
Length: 226
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 0.926 | 1.046 | 0.61 | 1.032 | 0.681 | 1.001 | 2.212 | 0.492 | 1.196 | 1.14 | 1.301 | 1.106 | 1.021 | 0.903 | 0.569 | 1.016 | 1.14 | 2.383 | 1.301 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16485
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.625
|
0.276
|
0.002
|
0.553
|
0.182
|
0.096
|
0.085
|
0.002
|
0.096
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002555
|
3.000
|
1.000
|
Hsc_gene_18605.t1
|
Hsc_gene_18605.t1;Hsc_gene_18610.t1;Hsc_gene_18610.t2
|
— |
Q96A44.1 SPRY domain-containing SOCS box protein 4 [Homo sapiens]
|
KAI1707158.1 SPRY domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.923|GO:0008152_0.831|GO:0044238_0.787|GO:0005575_0.785|GO:0110165_0.781|GO:0043170_0.736|GO:0019538_0.724|GO:0009056_0.711|GO:0009057_0.687|GO:0005622_0.685|GO:0030163_0.676|GO:0005737_0.649|GO:0003674_0.600|GO:0006508_0.523|GO:0006511_0.513|GO:0019941_0.513|GO:0043632_0.513|GO:0051603_0.513
|
IPR001870+4-198+|IPR003877+66-197_69-188+|IPR013320+9-201+|IPR043136+30-191+|IPR050672+15-203+
|
SM00449+66-197+
|
PF00622+69-188+SPRY_domain
|
G3DSA:2.60.120.920:FF:000035+29-192+SplA/ryanodine_receptor_domain_and_SOCS_box_containing_1
|
PTHR12245+15-203+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-226
|
6dn8_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
25658.170
|
7.506
|
5.000
|
28.319
|
15.929
|
45.133
|
54.867
|
16.372
|
11.947
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
cyan
|
16.145
|
1.210
|
5.651
|
5.548
|
11.030
|
13.864
|
76.382
|
25.941
|
0.000
|
18.272
|
10.441
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.980
|
2.052
|
— |
0.957
|
— |
2.473
|
0.794
|
1.704
|
— | — | — | — | — |
No JSON data available for plots.