Hg_chrom9_TN10mRNA_17448
Organism: Heterodera glycines Gene Locus: chr9:4254489-4257889 Feature type: polypeptideProtein Sequence
Length: 679
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.685 | 1.918 | 1.259 | 0.711 | 1.718 | 1.208 | 0.684 | 1.473 | 1.047 | 0.836 | 0.669 | 1.04 | 1.064 | 0.736 | 1.503 | 1.178 | 0.797 | 0.893 | 0.34 | 0.476 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16486
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
— |
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRIQEHNNNRRTFGRRRRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.852
|
0.060
|
0.021
|
0.286
|
0.087
|
0.036
|
0.085
|
0.048
|
0.100
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004954
|
2.000
|
1.000
|
Hsc_gene_18608.t1
|
Hsc_gene_18608.t1
|
— |
Q58CZ2.1 Protein-L-isoaspartate O-methyltransferase domain-containing protein 2 [Bos taurus]
|
KAH7730151.1 CRE-EIF-1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004719|GO:0036211
|
GO:0008150_0.915|GO:0003674_0.833|GO:0005575_0.831|GO:0110165_0.675|GO:0008152_0.627|GO:0005622_0.598|GO:0044238_0.573|GO:0043170_0.525|GO:0016020_0.503
|
IPR000682+4-274+|IPR029063+6-226_9-199+
|
— |
PF01135+10-219+Protein-L-isoaspartate(D-aspartate)_O-methyltransferase_(PCMT)
|
— |
PTHR11579+4-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
310-679
|
1.000
|
1-309
|
9omf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.543
|
76696.260
|
4.787
|
-27.000
|
31.959
|
8.837
|
58.027
|
41.973
|
14.728
|
17.231
|
51.694
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
87.062
|
31.678
|
24.904
|
21.228
|
21.934
|
21.897
|
123.668
|
109.068
|
52.242
|
208.822
|
141.716
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.580
|
-0.715
|
— | — | — |
2.508
|
2.212
|
0.323
|
-2.116
|
— |
-3.048
|
— | — |
No JSON data available for plots.