Hg_chrom9_TN10mRNA_17449
Organism: Heterodera glycines Gene Locus: chr9:4258057-4260488 Feature type: polypeptideProtein Sequence
Length: 520
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.783 | 0.894 | 0.559 | 0.663 | 0.577 | 0.394 | 0.527 | 2.115 | 1.368 | 1.975 | 0.612 | 1.018 | 2.511 | 0.925 | 0.942 | 1.126 | 0.757 | 0.816 | 2.663 | 1.301 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16487
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.176
|
0.300
|
0.011
|
0.087
|
0.922
|
0.202
|
0.572
|
0.013
|
0.175
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012893
|
1.000
|
1.000
|
Hsc_gene_18607.t1
|
Hsc_gene_18607.t1
|
— |
Q4V7R2.1 GPI mannosyltransferase 3 [Xenopus laevis]
|
KAI1728707.1 alg9-like mannosyltransferase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016757
|
GO:0005575_0.734|GO:0110165_0.734|GO:0016020_0.706|GO:0003674_0.666|GO:0071944_0.654|GO:0005886_0.647|GO:0005622_0.609|GO:0005737_0.597|GO:0043226_0.582|GO:0043229_0.581|GO:0043227_0.577|GO:0043231_0.566|GO:0008150_0.565|GO:0005773_0.541|GO:0012505_0.514|GO:0009987_0.504
|
IPR005599+11-416_15-489+
|
— |
PF03901+11-416+Alg9-like_mannosyltransferase_family
|
— |
PTHR22760+15-489+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-520
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
60403.730
|
9.053
|
22.000
|
19.423
|
21.154
|
37.308
|
62.692
|
12.885
|
6.538
|
42.692
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
285.863
|
420.540
|
247.020
|
224.855
|
205.667
|
178.698
|
189.624
|
207.495
|
50.302
|
585.210
|
355.964
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.997
|
-1.041
|
— | — | — | — | — | — |
-3.680
|
— | — | — | — |
No JSON data available for plots.