Hg_chrom9_TN10mRNA_17450
Organism: Heterodera glycines Gene Locus: chr9:4260543-4261189 Feature type: polypeptideProtein Sequence
Length: 111
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.314 | 1.048 | 0.983 | 1.243 | 1.652 | 2.079 | 0.965 | 1.802 | 2.202 | 0.73 | 1.502 | 0.53 | 1.001 | 0.52 | 1.103 | 0.129 | 1.034 | 0.819 | 0.0 | 1.06 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16488
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
— |
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.472
|
0.372
|
0.024
|
0.527
|
0.151
|
0.087
|
0.100
|
0.007
|
0.164
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004953
|
2.000
|
1.000
|
Hsc_gene_18606.t1
|
Hsc_gene_18606.t1
|
— |
Q9VZS3.1 Eukaryotic translation initiation factor eIF1 [Drosophila melanogaster]
|
KAF8367563.1 eif-1, partial [Pristionchus pacificus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003743|GO:0006413
|
GO:0005575_0.695|GO:0110165_0.684|GO:0005622_0.630|GO:0008150_0.588|GO:0003674_0.584|GO:0005737_0.575|GO:0005488_0.562|GO:0009987_0.539
|
IPR001950+29-99_29-100+|IPR005874+1-111_27-110+|IPR036877+17-111+
|
— |
PF01253+29-100+Translation_initiation_factor_SUI1
|
— |
PTHR10388+21-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-111
|
8s8k_m
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
12864.650
|
7.265
|
2.000
|
34.234
|
10.811
|
54.054
|
45.946
|
18.919
|
15.315
|
39.640
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
599.499
|
414.737
|
655.153
|
724.164
|
700.586
|
742.967
|
799.676
|
933.077
|
324.351
|
515.657
|
433.669
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.431
|
0.667
|
0.253
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.