Hg_chrom9_TN10mRNA_17454
Organism: Heterodera glycines Gene Locus: chr9:4270830-4271922 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 1.163 | 0.364 | 1.207 | 0.917 | 1.538 | 0.952 | 1.0 | 1.111 | 1.284 | 1.212 | 0.882 | 2.639 | 1.442 | 0.816 | 1.143 | 0.738 | 0.682 | 0.385 | 0.147 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16492
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
26-46
|
0.997
|
— | — |
0.003
|
— | — |
0.474
|
0.156
|
0.251
|
0.521
|
0.291
|
0.200
|
0.167
|
0.015
|
0.107
|
0.329
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012894
|
1.000
|
1.000
|
Hsc_gene_18603.t1
|
— | — |
Q08873.1 Transgelin [Saccharomyces cerevisiae S288C]
|
KAI6203623.1 Calponin-homology (CH) domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.803|GO:0005575_0.752|GO:0110165_0.741|GO:0009987_0.703|GO:0005622_0.679|GO:0043226_0.569|GO:0003674_0.537|GO:0065007_0.523|GO:0043229_0.520|GO:0050789_0.511
|
IPR001715+62-170_64-167_66-147+|IPR003096+60-73_89-104_122-138_138-153+|IPR036872+22-154_49-165+|IPR050606+39-152+
|
SM00033+64-167+
|
PF00307+66-147+Calponin_homology_(CH)_domain
|
— |
PTHR47385+39-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-200
|
1wym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.915
|
22244.770
|
9.687
|
11.000
|
21.500
|
12.500
|
45.000
|
55.000
|
14.000
|
7.500
|
48.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
4302.357
|
1797.443
|
4126.049
|
1744.245
|
422.885
|
4617.833
|
136.725
|
18517.531
|
9243.045
|
129.511
|
4035.311
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.970
|
-0.181
|
-1.133
|
-2.077
|
3.463
|
-5.067
|
1.896
|
-6.936
|
6.009
|
— | — | — | — |
No JSON data available for plots.