Hg_chrom9_TN10mRNA_17455
Organism: Heterodera glycines Gene Locus: chr9:4275532-4277848 Feature type: polypeptideProtein Sequence
Length: 386
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.295 | 1.627 | 0.424 | 0.983 | 0.432 | 1.461 | 0.956 | 1.813 | 0.518 | 0.77 | 1.099 | 1.067 | 0.864 | 1.196 | 0.634 | 1.776 | 1.402 | 0.51 | 1.196 | 0.381 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16493
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.793
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
AKGQKQRVKAGGKTKSKSGGGK
|
— | — |
82-118
|
0.997
|
— | — |
0.000
|
— | — |
0.858
|
0.052
|
0.009
|
0.450
|
0.018
|
0.015
|
0.017
|
0.007
|
0.040
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012895
|
1.000
|
1.000
|
Hsc_gene_18602.t3
|
Hsc_gene_18602.t2;Hsc_gene_18602.t3
|
— |
Q6BEB4.1 Transcription factor Sp5 [Homo sapiens]
|
CDJ88446.1 Zinc finger domain containing protein, partial [Haemonchus contortus]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0008150_0.892|GO:0009987_0.714|GO:0065007_0.690|GO:0050789_0.678|GO:0005575_0.630|GO:0110165_0.625|GO:0050794_0.621|GO:0003674_0.618|GO:0032502_0.604|GO:0048856_0.604|GO:0032501_0.603|GO:0005488_0.579|GO:0005622_0.518|GO:0043226_0.506|GO:0097159_0.502
|
IPR013087+341-370_343-365+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26;225-386
|
1.000
|
27-224
|
1va1_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.957
|
40848.580
|
10.253
|
28.000
|
18.912
|
9.585
|
52.591
|
47.409
|
13.990
|
4.922
|
61.917
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
201.835
|
297.529
|
250.220
|
94.344
|
112.166
|
79.288
|
288.992
|
231.109
|
63.784
|
327.575
|
214.521
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.479
|
-1.794
|
-1.298
|
— |
-0.487
|
1.876
|
1.442
|
0.464
|
— | — | — | — | — |
No JSON data available for plots.