Hg_chrom9_TN10mRNA_17456
Organism: Heterodera glycines Gene Locus: chr9:4277976-4278633 Feature type: polypeptideProtein Sequence
Length: 76
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.459 | 0.0 | 1.196 | 0.0 | 1.754 | 1.687 | 1.096 | 0.658 | 2.047 | 1.6 | 1.994 | 1.548 | 0.365 | 1.012 | 0.806 | 0.188 | 0.863 | 0.997 | 0.0 | 0.387 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16494
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.571
|
0.073
|
0.028
|
0.498
|
0.338
|
0.141
|
0.177
|
0.008
|
0.134
|
0.459
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012896
|
1.000
|
1.000
|
Hsc_gene_18601.t1
|
Hsc_gene_18601.t1
|
— |
Q9VJ33.1 NEDD8 [Drosophila melanogaster]
|
XP_015108615.1 NEDD8 [Diachasma alloeum]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.884|GO:0110165_0.877|GO:0005622_0.725|GO:0043226_0.688|GO:0043229_0.669|GO:0016020_0.662|GO:0008150_0.647|GO:0005737_0.605|GO:0043227_0.558|GO:0043231_0.550|GO:0003674_0.541
|
IPR000626+1-72_1-76_3-73+|IPR019954+27-52+|IPR019956+11-31_32-52_53-74+|IPR029071+1-76+|IPR038738+3-76+|IPR050158+1-76+
|
SM00213+1-72+
|
PF00240+3-73+Ubiquitin_family
|
G3DSA:3.10.20.90:FF:000023+1-76+NEDD8_protein
|
PTHR10666+1-76+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-76
|
6r7i_N
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
8526.000
|
7.014
|
0.500
|
35.526
|
3.947
|
48.684
|
51.316
|
18.421
|
17.105
|
38.158
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
881.860
|
291.627
|
510.024
|
967.305
|
1187.697
|
1193.279
|
930.840
|
896.323
|
521.236
|
1225.801
|
923.845
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.577
|
1.592
|
1.032
|
0.264
|
— |
-0.348
|
-0.518
|
0.198
|
— | — | — | — | — |
No JSON data available for plots.