SCN Proteipedia

Hg_chrom9_TN10mRNA_17457

Organism: Heterodera glycines Gene Locus: chr9:4278986-4297273 Feature type: polypeptide

Protein Sequence

Length: 2,292

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.7	1.268	0.992	0.542	1.353	1.622	0.426	1.505	1.202	1.25	0.972	1.617	1.236	0.688	1.273	1.222	0.78	0.892	0.671	0.68	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16495	—	Hg_chrom9_TN10gene_16495	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	0.961

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	KRVEELRQRIEKFRRC	—	—	—	—	—	—	0.000	—	—	0.195	0.158	0.016	0.678	0.201	0.332	0.313	0.008	0.573	0.056

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004958	1.000	2.000	Hsc_gene_18600.t2;Hsc_gene_18600.t3	Hsc_gene_18600.t1;Hsc_gene_18600.t2;Hsc_gene_18600.t3;Hsc_gene_18600.t4;Hsc_gene_18600.t5	—	O75962.2 Triple functional domain protein [Homo sapiens]	KAI1728715.1 rhoGEF domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005085\|GO:0035556	GO:0008150_0.948\|GO:0009987_0.913\|GO:0065007_0.866\|GO:0050789_0.855\|GO:0050794_0.834\|GO:0005575_0.811\|GO:0110165_0.807\|GO:0005622_0.725\|GO:0007154_0.624\|GO:0023052_0.623\|GO:0005737_0.618\|GO:0050896_0.605\|GO:0003674_0.599\|GO:0043226_0.542\|GO:0010646_0.515\|GO:0023051_0.513\|GO:0051716_0.508\|GO:0032502_0.506\|GO:0005488_0.504	IPR000219+1207-1386_1210-1384_1211-1385_1212-1381_1912-2090_1913-2088_1916-2088_1916-2089+\|IPR001251+21-157_29-116_29-148+\|IPR001331+2038-2063+\|IPR001849+1403-1510_1403-1512_2108-2216_2109-2218+\|IPR011993+1392-1511_2107-2242+\|IPR018159+272-486_274-377+\|IPR035899+1209-1389_1210-1389_1895-2101_1904-2106+\|IPR036865+6-121_17-148+\|IPR051336+1777-2254+	SM00150+274-377+\|SM00233+1403-1512_2109-2218+\|SM00325+1211-1385_1916-2089+\|SM00516+21-157+	PF00621+1212-1381_1916-2088+RhoGEF_domain\|PF00650+29-116+CRAL/TRIO_domain\|PF22697+1400-1507_2103-2212+SOS1/NGEF-like_PH_domain	G3DSA:1.20.900.10:FF:000008+1901-2106+rho_guanine_nucleotide_exchange_factor_25	PTHR22826+1777-2254+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1515-1916;2241-2292	2.000	1-1514;1917-2240	6d8z_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.597	263206.320	6.843	13.500	29.232	10.646	54.319	45.681	15.663	13.569	44.852

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	4037.523	4573.508	5012.195	2886.261	2436.183	2618.572	2865.598	5538.227	5283.980	3977.223	4537.262

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.097	-0.801	-0.688	-0.276	—	0.140	0.980	-0.810	—	—	—	—	—

No JSON data available for plots.

Back to Browser