Hg_chrom9_TN10mRNA_17467
Organism: Heterodera glycines Gene Locus: chr9:4348275-4350498 Feature type: polypeptideProtein Sequence
Length: 446
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.095 | 1.043 | 0.978 | 1.005 | 1.196 | 1.322 | 1.014 | 0.224 | 1.545 | 1.06 | 1.019 | 1.583 | 1.37 | 0.474 | 1.052 | 0.705 | 0.845 | 1.189 | 0.0 | 0.528 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16505
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.776
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
19-44
|
0.944
|
3-31
|
0.997
|
— | — |
0.000
|
— | — |
0.044
|
0.917
|
0.007
|
0.180
|
0.054
|
0.043
|
0.103
|
0.010
|
0.078
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012903
|
1.000
|
1.000
|
Hsc_gene_18589.t1
|
Hsc_gene_18589.t1
|
— |
P53589.1 Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [Caenorhabditis elegans]
|
KAF8372191.1 sucg-1, partial [Pristionchus pacificus]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0005524|GO:0006099
|
GO:0005575_0.898|GO:0110165_0.890|GO:0005622_0.798|GO:0005737_0.769|GO:0016020_0.678|GO:0043226_0.615|GO:0043229_0.601|GO:0043227_0.567|GO:0043231_0.551
|
IPR005809+24-429_31-429_31-431_32-428+|IPR005811+302-396+|IPR013650+32-243+|IPR013815+51-150+|IPR016102+279-427_280-431+|IPR017866+297-322+
|
— |
PF00549+302-396+CoA-ligase|PF08442+32-243+ATP-grasp_domain
|
G3DSA:3.30.470.20:FF:000002+132-277+Succinate--CoA_ligase_[ADP-forming]_subunit_beta|G3DSA:3.40.50.261:FF:000001+280-430+Succinate--CoA_ligase_[ADP-forming]_subunit_beta
|
PTHR11815+24-429+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
433-446
|
1.000
|
1-432
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
48712.010
|
5.657
|
-2.000
|
24.888
|
7.175
|
44.619
|
55.381
|
12.332
|
12.556
|
51.121
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
1349.006
|
1155.185
|
886.038
|
1436.579
|
1458.952
|
957.264
|
1237.079
|
800.625
|
865.185
|
2278.615
|
1672.860
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.613
|
0.177
|
0.807
|
— |
-0.593
|
0.380
|
-0.363
|
0.769
|
— | — | — | — | — |
No JSON data available for plots.