Hg_chrom9_TN10mRNA_17468
Organism: Heterodera glycines Gene Locus: chr9:4350774-4352429 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.989 | 0.887 | 1.12 | 0.91 | 0.929 | 0.526 | 0.768 | 0.587 | 1.499 | 1.387 | 1.2 | 2.07 | 1.222 | 0.79 | 0.958 | 0.922 | 0.961 | 1.066 | 0.451 | 0.604 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16506
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.157
|
0.864
|
0.120
|
0.357
|
0.030
|
0.055
|
0.067
|
0.099
|
0.104
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012904
|
1.000
|
1.000
|
Hsc_gene_18588.t1
|
Hsc_gene_18588.t1
|
— |
Q91Z53.1 Glyoxylate reductase/hydroxypyruvate reductase [Mus musculus]
|
KAI1728016.1 d-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016616|GO:0051287
|
GO:0008150_0.785|GO:0005575_0.770|GO:0110165_0.758|GO:0009987_0.664|GO:0003674_0.663|GO:0005622_0.617|GO:0005737_0.593|GO:0008152_0.592|GO:0044237_0.562|GO:0003824_0.526|GO:0016020_0.507
|
IPR006139+38-334+|IPR006140+132-307+|IPR029753+246-262+|IPR036291+124-308+|IPR050223+57-334+
|
— |
PF00389+38-334+D-isomer_specific_2-hydroxyacid_dehydrogenase,_catalytic_domain|PF02826+132-307+D-isomer_specific_2-hydroxyacid_dehydrogenase,_NAD_binding_domain
|
G3DSA:3.40.50.720:FF:000026+122-306+Glyoxylate/hydroxypyruvate_reductase_B
|
PTHR10996+57-334+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-341
|
2q50_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
37557.780
|
8.022
|
5.000
|
25.513
|
8.211
|
43.695
|
56.305
|
13.783
|
11.730
|
51.026
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
steelblue
|
350.572
|
144.472
|
233.007
|
345.724
|
525.062
|
454.731
|
880.176
|
277.585
|
232.919
|
286.277
|
263.409
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.459
|
1.122
|
0.678
|
0.571
|
-0.193
|
0.963
|
-0.821
|
1.809
|
— | — |
2.727
|
— | — |
No JSON data available for plots.