SCN Proteipedia

Hg_chrom9_TN10mRNA_17470

Organism: Heterodera glycines Gene Locus: chr9:4354346-4359192 Feature type: polypeptide

Protein Sequence

Length: 920

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.708	1.39	0.83	0.675	1.268	1.059	0.699	0.87	1.329	1.513	0.856	0.831	1.087	0.815	1.287	1.211	0.855	0.791	0.418	1.151	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16508	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	—	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.903	0.139	0.021	0.307	0.026	0.042	0.034	0.062	0.066	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012906	1.000	1.000	Hsc_gene_18586.t1	Hsc_gene_18586.t1	—	Q19546.2 ATP-dependent helicase wrn-1 [Caenorhabditis elegans]	KAI1713758.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0003676\|GO:0004386\|GO:0005524\|GO:0006260\|GO:0006281\|GO:0006310\|GO:0043138\|GO:0044237	GO:0008150_0.899\|GO:0009987_0.847\|GO:0005575_0.767\|GO:0110165_0.763\|GO:0003674_0.726\|GO:0005622_0.670\|GO:0008152_0.650\|GO:0044238_0.636\|GO:0071840_0.636\|GO:0016043_0.619\|GO:0043226_0.617\|GO:0043170_0.612\|GO:0043229_0.605\|GO:0050896_0.604\|GO:0003824_0.599\|GO:0016020_0.595\|GO:0006139_0.579\|GO:0006996_0.569\|GO:0090304_0.564\|GO:0016787_0.550\|GO:0051276_0.538\|GO:0006259_0.525\|GO:0043227_0.523\|GO:0032392_0.513\|GO:0071103_0.513\|GO:0051716_0.512	IPR001650+282-434_296-393_312-393+\|IPR002121+664-744_669-734+\|IPR004589+68-546+\|IPR010997+669-745+\|IPR011545+79-237+\|IPR014001+74-267_86-251+\|IPR018982+487-595_491-603+\|IPR027417+39-258_118-412_259-482+\|IPR029491+784-863+\|IPR032284+405-470+\|IPR036388+484-612+\|IPR036390+485-611+\|IPR044876+663-748+	SM00341+664-744+\|SM00487+74-267+\|SM00490+312-393+\|SM00956+491-603+	PF00270+79-237+DEAD/DEAH_box_helicase\|PF00271+296-393+Helicase_conserved_C-terminal_domain\|PF00570+669-734+HRDC_domain\|PF09382+487-595+RQC_domain\|PF14493+784-863+Helix-turn-helix_domain\|PF16124+405-470+RecQ_zinc-binding	G3DSA:3.40.50.300:FF:001389+56-258+ATP-dependent_DNA_helicase_RecQ	PTHR13710+54-742+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-3	1.000	4-920	6yhr_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.755	103749.910	7.135	6.000	25.870	10.109	49.674	50.326	13.696	12.174	47.609

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	paleturquoise	1194.819	2170.173	1214.283	1171.288	1368.194	1552.086	2078.786	1418.581	557.554	694.145	635.606

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.068	-1.027	—	0.193	0.197	0.432	-0.235	0.694	—	—	—	—	—

No JSON data available for plots.

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