Hg_chrom9_TN10mRNA_17472
Organism: Heterodera glycines Gene Locus: chr9:4384329-4386078 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.048 | 1.048 | 0.655 | 0.828 | 1.201 | 1.386 | 0.894 | 1.351 | 0.868 | 0.974 | 0.683 | 1.766 | 1.084 | 0.693 | 1.777 | 1.587 | 0.837 | 0.592 | 1.155 | 0.353 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16510
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
54-74
|
0.998
|
44-89
|
1.000
|
— | — |
0.000
|
— | — |
0.244
|
0.403
|
0.041
|
0.635
|
0.111
|
0.245
|
0.256
|
0.116
|
0.470
|
0.151
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012908
|
1.000
|
1.000
|
Hsc_gene_18584.t1
|
Hsc_gene_18584.t1
|
— |
Q09240.3 Globin-like protein 9 [Caenorhabditis elegans]
|
KAI1716091.1 globin-like protein 9 [Ditylenchus destructor]
|
No
|
-0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019825|GO:0020037
|
GO:0005575_0.899|GO:0110165_0.887|GO:0005622_0.830|GO:0016020_0.785|GO:0043226_0.765|GO:0043229_0.755|GO:0043227_0.717|GO:0043231_0.694|GO:0005634_0.649|GO:0031974_0.588|GO:0043233_0.588|GO:0070013_0.587|GO:0031981_0.582|GO:0005652_0.540|GO:0034399_0.540
|
IPR009050+86-249+|IPR012292+85-259+|IPR044399+94-246+|IPR050532+31-279+
|
— | — | — |
PTHR46458+31-279+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-68;264-333
|
1.000
|
69-263
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.915
|
36976.540
|
9.097
|
12.500
|
26.727
|
9.309
|
52.853
|
47.147
|
15.916
|
10.811
|
50.751
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
paleturquoise
|
327.822
|
223.068
|
540.546
|
180.924
|
67.031
|
46.290
|
270.895
|
248.381
|
735.118
|
291.455
|
481.596
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.047
|
-0.440
|
-1.470
|
-1.466
|
-0.519
|
2.560
|
2.324
|
— | — | — | — | — | — |
No JSON data available for plots.