Hg_chrom9_TN10mRNA_17473
Organism: Heterodera glycines Gene Locus: chr9:4386213-4388408 Feature type: polypeptideProtein Sequence
Length: 199
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.818 | 0.701 | 0.914 | 1.04 | 1.843 | 0.387 | 0.658 | 2.01 | 1.452 | 1.29 | 1.142 | 1.478 | 0.838 | 1.063 | 1.231 | 0.431 | 1.071 | 0.838 | 1.546 | 0.591 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16511
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.530
|
0.238
|
0.078
|
0.661
|
0.059
|
0.149
|
0.072
|
0.055
|
0.053
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012909
|
1.000
|
1.000
|
Hsc_gene_18582.t2
|
Hsc_gene_18582.t1;Hsc_gene_18582.t2
|
— |
Q9Y3B8.3 Oligoribonuclease, mitochondrial [Homo sapiens]
|
KAH7712237.1 oligoribonuclease [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000175|GO:0003676
|
GO:0005575_0.775|GO:0110165_0.765|GO:0005622_0.751|GO:0005737_0.699|GO:0016020_0.676|GO:0043226_0.670|GO:0043229_0.661|GO:0008150_0.654|GO:0043227_0.631|GO:0043231_0.618|GO:0008152_0.538|GO:0044238_0.518
|
IPR012337+18-197+|IPR013520+21-198_23-189+|IPR022894+21-186_22-197+|IPR036397+10-199+
|
SM00479+21-198+
|
PF00929+23-189+Exonuclease
|
— |
PTHR11046+21-186+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8
|
1.000
|
9-199
|
6sty_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
22767.210
|
6.297
|
-1.000
|
33.668
|
11.055
|
47.739
|
52.261
|
17.588
|
16.080
|
44.221
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
803.048
|
394.159
|
642.780
|
852.986
|
1181.731
|
858.979
|
1987.398
|
580.754
|
512.941
|
691.582
|
615.022
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.475
|
0.977
|
0.518
|
0.438
|
-0.446
|
1.222
|
-0.671
|
1.919
|
— | — | — | — | — |
No JSON data available for plots.