Hg_chrom9_TN10mRNA_17479
Organism: Heterodera glycines Gene Locus: chr9:4399737-4402532 Feature type: polypeptideProtein Sequence
Length: 357
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 0.847 | 0.866 | 0.966 | 0.654 | 0.503 | 0.767 | 0.56 | 1.494 | 1.741 | 0.806 | 2.142 | 2.49 | 0.377 | 0.8 | 1.24 | 0.872 | 0.934 | 0.646 | 1.236 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16517
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.098
|
0.103
|
0.009
|
0.072
|
0.419
|
0.447
|
0.836
|
0.010
|
0.260
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012915
|
1.000
|
1.000
|
Hsc_gene_18577.t1
|
Hsc_gene_18577.t1
|
— |
Q02334.2 UDP-galactose translocator 1 [Caenorhabditis elegans]
|
KAI1713617.1 nucleotide-sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000139|GO:0015165|GO:0016020|GO:0090481
|
GO:0005575_0.848|GO:0110165_0.848|GO:0016020_0.816|GO:0071944_0.806|GO:0005886_0.805|GO:0008150_0.781|GO:0009987_0.727|GO:0005622_0.717|GO:0005737_0.708|GO:0006810_0.694|GO:0051179_0.694|GO:0051234_0.694|GO:0043226_0.693|GO:0005773_0.691|GO:0043227_0.691|GO:0043229_0.691|GO:0043231_0.691|GO:0012505_0.659|GO:0055085_0.644|GO:0003674_0.586|GO:0005215_0.523|GO:0022857_0.523|GO:0071705_0.520|GO:0015711_0.514|GO:0005794_0.512
|
IPR007271+29-357_45-353_46-355+
|
— |
PF04142+45-353+Nucleotide-sugar_transporter
|
— |
PTHR10231+46-355+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-357
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
40206.120
|
7.746
|
4.000
|
19.048
|
15.126
|
38.655
|
61.345
|
10.364
|
8.683
|
46.499
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
994.135
|
1995.983
|
1209.600
|
1054.090
|
1101.163
|
972.010
|
740.021
|
1205.048
|
439.534
|
915.471
|
711.498
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.953
|
-1.058
|
— | — |
-0.166
|
-0.387
|
— |
-0.566
|
— | — | — | — | — |
No JSON data available for plots.