SCN Proteipedia

Hg_chrom9_TN10mRNA_17480

Organism: Heterodera glycines Gene Locus: chr9:4402661-4406988 Feature type: polypeptide

Protein Sequence

Length: 864

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.659	1.13	1.01	1.038	0.984	1.068	0.372	1.736	1.26	2.049	0.912	0.885	1.511	0.712	1.039	1.339	0.455	1.052	0.712	0.477	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16518	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.995

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.516	0.171	0.016	0.449	0.281	0.302	0.145	0.045	0.110	0.101

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004960	2.000	1.000	Hsc_gene_18576.t1	Hsc_gene_18576.t1	—	—	KAI1730155.1 TELO2-interacting protein 1 like protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.957\|GO:0005575_0.927\|GO:0110165_0.924\|GO:0009987_0.912\|GO:0005622_0.856\|GO:0065007_0.852\|GO:0050789_0.837\|GO:0050896_0.816\|GO:0050794_0.810\|GO:0005737_0.805\|GO:0051716_0.795\|GO:0007154_0.759\|GO:0023052_0.757\|GO:0007165_0.745\|GO:0048518_0.744\|GO:0048519_0.733\|GO:0048522_0.733\|GO:0006950_0.728\|GO:0048523_0.722\|GO:0010646_0.720\|GO:0023051_0.718\|GO:0048583_0.712\|GO:0009966_0.705\|GO:0033554_0.700\|GO:0035556_0.699\|GO:0010647_0.696\|GO:0023056_0.696\|GO:1902531_0.696\|GO:0048584_0.690\|GO:0009967_0.688\|GO:0007049_0.685\|GO:0022402_0.685\|GO:0080134_0.685\|GO:0051726_0.680\|GO:1902533_0.680\|GO:0006974_0.678\|GO:0010564_0.677\|GO:0044770_0.674\|GO:1901987_0.673\|GO:0000075_0.670\|GO:0000077_0.670\|GO:0010948_0.670\|GO:0031570_0.670\|GO:0031929_0.670\|GO:0032006_0.670\|GO:0042770_0.670\|GO:0045786_0.670\|GO:0080135_0.670\|GO:1901976_0.670\|GO:1901978_0.670\|GO:1901988_0.670\|GO:2000001_0.670\|GO:2000003_0.670\|GO:0032991_0.647\|GO:0140535_0.552\|GO:0031931_0.540\|GO:0031932_0.540\|GO:0038201_0.540\|GO:0110078_0.540	IPR016024+72-850+\|IPR052587+60-860+	—	—	—	PTHR18460+60-860+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-864	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.634	98189.840	7.235	12.000	26.042	11.458	47.222	52.778	14.583	11.458	45.023

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	lightcyan	1798.756	3764.197	2247.322	1844.036	1611.302	1501.102	1261.876	2386.099	1139.129	1534.235	1364.904

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.974	-1.167	-0.177	-0.226	—	-0.244	0.566	-0.781	—	—	—	—	—

No JSON data available for plots.

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