Hg_chrom9_TN10mRNA_17484
Organism: Heterodera glycines Gene Locus: chr9:4414120-4415176 Feature type: polypeptideProtein Sequence
Length: 269
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.865 | 1.47 | 0.473 | 2.948 | 1.053 | 1.239 | 0.354 | 1.115 | 0.661 | 0.954 | 0.451 | 0.656 | 1.342 | 1.93 | 1.214 | 1.328 | 1.036 | 0.394 | 3.432 | 0.328 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16521
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
10-Pre_planta
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
— | — | — |
7-39
|
0.939
|
1-21
|
0.997
|
1.000
|
0.000
|
0.000
|
0.304
|
0.450
|
0.028
|
0.377
|
0.166
|
0.099
|
0.155
|
0.166
|
0.207
|
0.698
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012918
|
1.000
|
1.000
|
Hsc_gene_18573.t1
|
Hsc_gene_18573.t1
|
— |
P98167.2 SCO-spondin [Bos taurus]
|
KAI1723239.1 thrombospondin-1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.912|GO:0005575_0.813|GO:0110165_0.813|GO:0009987_0.748|GO:0065007_0.721|GO:0050789_0.718|GO:0032501_0.656|GO:0032502_0.644|GO:0048856_0.632|GO:0050794_0.590|GO:0016020_0.586|GO:0007275_0.574|GO:0071944_0.573|GO:0048731_0.562|GO:0050896_0.560|GO:0003674_0.504
|
IPR000884+23-73_165-216_168-216_170-215+|IPR036383+18-70_20-66_144-220_165-209+|IPR052065+18-127+
|
SM00209+23-73_168-216+
|
PF00090+170-215+Thrombospondin_type_1_domain
|
— |
PTHR22906+18-127+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-269
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
30519.570
|
7.112
|
3.000
|
20.074
|
12.639
|
46.840
|
53.160
|
11.152
|
8.922
|
56.134
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
violet
|
498.105
|
400.385
|
217.152
|
191.417
|
159.844
|
96.897
|
92.674
|
215.091
|
645.624
|
1179.945
|
950.951
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.114
|
-1.202
|
— |
-0.290
|
-0.709
|
— |
1.050
|
-1.076
|
— | — | — | — | — |