Hg_chrom9_TN10mRNA_17486
Organism: Heterodera glycines Gene Locus: chr9:4417529-4419441 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.532 | 0.737 | 1.088 | 0.364 | 1.232 | 0.813 | 0.419 | 1.056 | 1.33 | 1.618 | 1.067 | 1.45 | 1.272 | 1.219 | 1.725 | 0.604 | 1.039 | 1.014 | 1.083 | 1.036 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16523
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.600
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
PWFKRKF,KRMLEFIEEYRRKRGS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.061
|
0.977
|
0.063
|
0.135
|
0.030
|
0.038
|
0.065
|
0.074
|
0.035
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012920
|
1.000
|
1.000
|
Hsc_gene_18571.t1
|
Hsc_gene_18571.t1
|
— |
Q95Y83.1 Large ribosomal subunit protein bL19m [Caenorhabditis elegans]
|
KAH7728356.1 Protein MRPL-19 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.898|GO:0110165_0.892|GO:0016020_0.817|GO:0005622_0.812|GO:0005737_0.766|GO:0043226_0.761|GO:0043229_0.761|GO:0043227_0.719|GO:0043231_0.712
|
IPR001857+30-183_77-167+|IPR008991+76-201+|IPR038657+53-176+
|
— |
PF01245+77-167+Ribosomal_protein_L19
|
G3DSA:2.30.30.790:FF:000002+59-180+39S_ribosomal_protein_L19,_mitochondrial
|
PTHR15680+30-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-284
|
6nu3_Q
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
33280.680
|
9.383
|
9.000
|
30.986
|
11.620
|
47.887
|
52.113
|
17.606
|
13.380
|
41.901
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1231.650
|
1752.222
|
801.139
|
1054.727
|
1224.610
|
943.838
|
1061.054
|
994.472
|
791.745
|
1857.638
|
1400.827
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.358
|
-0.869
|
0.505
|
0.183
|
-0.361
|
— | — |
0.237
|
— | — | — | — | — |
No JSON data available for plots.