Hg_chrom9_TN10mRNA_17487
Organism: Heterodera glycines Gene Locus: chr9:4420456-4423437 Feature type: polypeptideProtein Sequence
Length: 526
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.685 | 1.238 | 0.968 | 1.77 | 0.792 | 1.121 | 0.543 | 1.236 | 1.141 | 2.081 | 0.374 | 0.783 | 1.584 | 0.658 | 1.63 | 1.249 | 0.623 | 0.922 | 0.439 | 0.447 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16524
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.636
|
0.437
|
0.012
|
0.592
|
0.227
|
0.106
|
0.125
|
0.004
|
0.176
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004961
|
2.000
|
1.000
|
Hsc_gene_18570.t1
|
Hsc_gene_18570.t1;Hsc_gene_18570.t2
|
— | — |
KAI1704549.1 F-box/LRR-repeat protein 4 [Ditylenchus destructor]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.902|GO:0110165_0.900|GO:0005622_0.805|GO:0005737_0.742|GO:0008150_0.513
|
IPR001611+144-163_441-464+|IPR006553+60-85_86-116_141-166_167-192_390-414_441-466+|IPR032675+10-249_331-524+
|
SM00367+60-85_86-116_141-166_167-192_390-414_441-466+
|
PF13516+144-163_441-464+Leucine_Rich_repeat
|
— |
PTHR13318+172-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-526
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
59343.660
|
7.526
|
8.500
|
23.004
|
10.266
|
45.247
|
54.753
|
12.928
|
10.076
|
48.289
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
983.394
|
379.474
|
1007.038
|
861.645
|
523.828
|
876.647
|
715.492
|
3616.295
|
479.616
|
949.978
|
748.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.179
|
1.046
|
-0.117
|
-0.750
|
0.758
|
-0.283
|
1.941
|
-2.196
|
— | — | — | — | — |
No JSON data available for plots.