Hg_chrom9_TN10mRNA_17488
Organism: Heterodera glycines Gene Locus: chr9:4420456-4423437 Feature type: polypeptideProtein Sequence
Length: 521
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.692 | 1.205 | 0.942 | 1.787 | 0.8 | 1.132 | 0.548 | 1.248 | 1.152 | 2.101 | 0.378 | 0.79 | 1.546 | 0.664 | 1.645 | 1.261 | 0.598 | 0.902 | 0.443 | 0.452 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16524
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.622
|
0.465
|
0.013
|
0.599
|
0.214
|
0.118
|
0.123
|
0.005
|
0.170
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004961
|
2.000
|
1.000
|
Hsc_gene_18570.t1
|
Hsc_gene_18570.t1;Hsc_gene_18570.t2
|
— | — |
KAI1704549.1 F-box/LRR-repeat protein 4 [Ditylenchus destructor]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.902|GO:0110165_0.902|GO:0005622_0.806|GO:0005737_0.741|GO:0008150_0.512
|
IPR001611+139-158_436-459+|IPR006553+60-85_86-111_136-161_162-187_385-409_436-461+|IPR032675+21-153_199-518+
|
SM00367+60-85_86-111_136-161_162-187_385-409_436-461+
|
PF13516+139-158_436-459+Leucine_Rich_repeat
|
— |
PTHR13318+163-515+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-521
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.726
|
58767.050
|
7.640
|
9.500
|
23.033
|
10.173
|
45.106
|
54.894
|
13.052
|
9.981
|
47.985
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
983.394
|
379.474
|
1007.038
|
861.645
|
523.828
|
876.647
|
715.492
|
3616.295
|
479.616
|
949.978
|
748.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.179
|
1.046
|
-0.117
|
-0.750
|
0.758
|
-0.283
|
1.941
|
-2.196
|
— | — | — | — | — |
No JSON data available for plots.