SCN Proteipedia

Hg_chrom9_TN10mRNA_17489

Organism: Heterodera glycines Gene Locus: chr9:4424867-4432171 Feature type: polypeptide

Protein Sequence

Length: 659

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.112	1.412	0.91	0.837	0.759	1.362	0.723	1.669	1.214	0.984	0.805	1.071	0.801	1.051	0.929	1.301	0.995	0.943	0.817	0.714	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16525	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.468	0.347	0.015	0.637	0.123	0.216	0.263	0.062	0.289	0.033

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000939	1.000	5.000	Hsc_gene_18569.t1;Hsc_gene_18569.t2;Hsc_gene_18569.t3;Hsc_gene_18569.t4;Hsc_gene_18569.t5	Hsc_gene_18569.t1;Hsc_gene_18569.t2;Hsc_gene_18569.t4;Hsc_gene_18569.t6;Hsc_gene_18569.t7	—	A8WXF6.1 Calcium/calmodulin-dependent protein kinase type II [Caenorhabditis briggsae]	KAI6227423.1 Calcium/calmodulin-dependent protein kinase [Aphelenchoides fujianensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004683\|GO:0005516\|GO:0005524\|GO:0006468	GO:0008150_0.965\|GO:0065007_0.918\|GO:0009987_0.915\|GO:0050789_0.910\|GO:0005575_0.902\|GO:0110165_0.900\|GO:0003674_0.882\|GO:0050794_0.863\|GO:0005622_0.798\|GO:0003824_0.779\|GO:0140096_0.779\|GO:0050896_0.772\|GO:0016740_0.760\|GO:0016020_0.726\|GO:0004672_0.725\|GO:0016301_0.725\|GO:0016772_0.725\|GO:0016773_0.725\|GO:0032501_0.718\|GO:0004674_0.680\|GO:0023052_0.672\|GO:0005737_0.667\|GO:0007154_0.667\|GO:0043226_0.664\|GO:0051179_0.628\|GO:0051716_0.628\|GO:0071840_0.612\|GO:0016043_0.605\|GO:0005488_0.604\|GO:0032502_0.603\|GO:0048856_0.603\|GO:0048518_0.580\|GO:0043229_0.571\|GO:0005515_0.568\|GO:0007275_0.551\|GO:0007165_0.538\|GO:0008152_0.537\|GO:0044237_0.536\|GO:0048522_0.532\|GO:0043170_0.528\|GO:0032879_0.521\|GO:0030054_0.518\|GO:0010646_0.514\|GO:0048731_0.513	IPR000719+49-290+\|IPR008271+167-179+\|IPR011009+46-352+\|IPR013543+511-638+\|IPR017441+55-78+\|IPR032710+509-637+	SM00220+49-290+	PF00069+49-290+Protein_kinase_domain\|PF08332+511-638+Calcium/calmodulin_dependent_protein_kinase_II_association_domain	G3DSA:1.10.510.10:FF:000001+129-300+Calcium/calmodulin-dependent_protein_kinase_type_II_subunit_delta\|G3DSA:3.10.450.50:FF:000009+501-641+Calcium/calmodulin-dependent_protein_kinase_type_II\|G3DSA:3.30.200.20:FF:000002+36-128+Calcium/calmodulin-dependent_protein_kinase_type_II_subunit_delta_isoform_2	PTHR24347+30-419+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-50;332-466;646-659	2.000	51-331;467-645	2bdw_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.837	71957.110	7.753	13.000	22.762	9.712	49.317	50.683	13.202	9.560	55.994

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	tan	3963.325	5143.300	7477.117	3945.525	2867.850	3717.910	3281.701	9148.013	3995.821	999.652	2283.724

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.311	-0.520	-0.815	-0.492	0.389	-0.170	1.197	-1.338	1.875	—	—	—	—

No JSON data available for plots.

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