SCN Proteipedia

Hg_chrom9_TN10mRNA_17492

Organism: Heterodera glycines Gene Locus: chr9:4436642-4440425 Feature type: polypeptide

Protein Sequence

Length: 578

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.583	0.885	1.195	0.656	1.644	0.843	0.638	1.903	1.423	1.192	1.494	2.035	0.721	0.699	0.953	0.939	0.709	0.944	1.198	0.662	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16528	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.823

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRHR,KKKKLKKKRKRRRDI,KNKKKKLKKKRKRRR,KRALKKMDETLTKNKKKKL,KKMDETLTKNKKKKLKKKR	—	—	—	—	—	—	0.000	—	—	0.624	0.157	0.003	0.674	0.116	0.019	0.030	0.007	0.160	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012922	1.000	1.000	Hsc_gene_18567.t1	Hsc_gene_18567.t1	—	Q03563.3 Serine/threonine-protein kinase spk-1 [Caenorhabditis elegans]	KAF7630012.1 Protein kinase domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.932\|GO:0003674_0.857\|GO:0009987_0.828\|GO:0005575_0.757\|GO:0110165_0.747\|GO:0003824_0.721\|GO:0005622_0.717\|GO:0008152_0.705\|GO:0044237_0.693\|GO:0044238_0.692\|GO:0065007_0.691\|GO:0016740_0.689\|GO:0043170_0.688\|GO:0140096_0.676\|GO:0050789_0.672\|GO:0050794_0.655\|GO:0016772_0.645\|GO:0016301_0.634\|GO:0016773_0.634\|GO:0004672_0.633\|GO:0004674_0.618\|GO:0043226_0.593\|GO:0016020_0.581\|GO:0043229_0.579\|GO:0009058_0.574\|GO:0044249_0.556\|GO:0050896_0.540\|GO:0009059_0.535\|GO:0019538_0.529\|GO:0010467_0.505\|GO:0006139_0.501	IPR000719+69-218_69-573_409-573+\|IPR008271+198-210+\|IPR011009+63-576+\|IPR017441+75-98+\|IPR051334+23-573+	SM00220+69-573+	PF00069+69-218_409-573+Protein_kinase_domain	G3DSA:1.10.510.10:FF:001037+393-573+SRSF_protein_kinase_2\|G3DSA:3.30.200.20:FF:000163+44-153+SRSF_protein_kinase_2_isoform_X1	PTHR47634+23-573+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-56;241-402	2.000	57-240;403-578	1wbp_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.539	66231.800	6.508	0.000	34.775	10.208	52.768	47.232	18.339	16.436	43.426

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	2546.719	2949.966	2792.202	1917.626	2200.159	2680.591	2168.877	3503.432	3647.337	1576.571	2464.042

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.308	-0.758	-0.434	0.167	0.300	-0.295	0.281	-0.548	—	—	—	—	—

No JSON data available for plots.

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