SCN Proteipedia

Hg_chrom9_TN10mRNA_17494

Organism: Heterodera glycines Gene Locus: chr9:4454611-4456467 Feature type: polypeptide

Protein Sequence

Length: 405

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.689	1.091	0.718	0.851	0.494	0.696	0.676	1.728	1.317	1.301	0.935	1.017	1.92	1.14	1.109	1.34	0.85	1.122	0.57	1.089	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16530	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KKKR,KKAEQREKKASPSPRVRRA	—	—	—	—	—	—	0.000	—	—	0.077	0.050	0.023	0.176	0.140	0.072	0.127	0.025	0.755	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002553	3.000	1.000	Hsc_gene_18631.t1	Hsc_gene_18631.t1	—	Q9I8C7.1 Neuronal acetylcholine receptor subunit alpha-10 [Gallus gallus]	KHN75680.1 Ligand-gated ion channel 4 [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0005575_0.943\|GO:0110165_0.943\|GO:0016020_0.891\|GO:0008150_0.877\|GO:0071944_0.862\|GO:0005886_0.831\|GO:0009987_0.812\|GO:0065007_0.755\|GO:0003674_0.721\|GO:0050789_0.706\|GO:0006810_0.692\|GO:0051179_0.692\|GO:0051234_0.692\|GO:0023052_0.660\|GO:0050794_0.660\|GO:0007154_0.659\|GO:0032501_0.659\|GO:0030054_0.631\|GO:0055085_0.623\|GO:0050896_0.620\|GO:0006811_0.601\|GO:0034220_0.598\|GO:0051716_0.598\|GO:0007267_0.596\|GO:0065008_0.589\|GO:0045202_0.587\|GO:0098916_0.586\|GO:0099536_0.586\|GO:0099537_0.586\|GO:0007268_0.582\|GO:0060089_0.580\|GO:0038023_0.579\|GO:0007165_0.554\|GO:0003008_0.552\|GO:0098590_0.537\|GO:0005215_0.530\|GO:0022857_0.530\|GO:0042391_0.517\|GO:0050877_0.517\|GO:0007166_0.512\|GO:0015267_0.512\|GO:0022803_0.512\|GO:0015075_0.511\|GO:0005216_0.509\|GO:0006812_0.506\|GO:0043226_0.506\|GO:0098655_0.506	IPR006029+118-256+\|IPR006201+9-244+\|IPR006202+9-109+\|IPR018000+28-42+\|IPR036719+109-227+\|IPR036734+3-113_9-109+\|IPR038050+114-234+	—	PF02931+9-109+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+118-256+Neurotransmitter-gated_ion-channel_transmembrane_region	G3DSA:1.20.58.390:FF:000073+115-236+Neuronal_acetylcholine_receptor_subunit_alpha-9-II\|G3DSA:2.70.170.10:FF:000060+4-113+Nicotinic_acetylcholine_receptor_subunit_alpha4	PTHR18945+9-244+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-405	6pv8_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.857	45507.730	9.882	26.000	21.975	14.815	43.951	56.049	15.062	6.914	50.617

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	323.577	310.194	331.254	249.865	318.820	216.667	229.635	128.131	115.354	659.920	426.534

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.450	-0.297	0.319	-0.543	—	-0.865	0.984	—	—	—	—	—

No JSON data available for plots.

Back to Browser