Hg_chrom9_TN10mRNA_17497
Organism: Heterodera glycines Gene Locus: chr9:4469999-4471044 Feature type: polypeptideProtein Sequence
Length: 226
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.463 | 0.823 | 0.965 | 0.153 | 1.475 | 0.567 | 0.421 | 1.77 | 0.59 | 0.837 | 0.536 | 1.301 | 1.352 | 2.383 | 2.077 | 0.442 | 0.725 | 0.939 | 2.042 | 2.993 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16533
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.099
|
0.931
|
0.009
|
0.187
|
0.114
|
0.027
|
0.049
|
0.009
|
0.021
|
0.009
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004962
|
2.000
|
1.000
|
Hsc_gene_18566.t1
|
Hsc_gene_18566.t1
|
— | — |
XP_024501614.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8 family-containing protein [Strongyloides ratti];CEF62412.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8 family-containing protein [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005739
|
GO:0005575_0.848|GO:0110165_0.843|GO:0016020_0.791|GO:0005622_0.770|GO:0005737_0.757|GO:0043226_0.737|GO:0043229_0.724|GO:0043227_0.714|GO:0043231_0.705|GO:0031090_0.586|GO:0005739_0.567|GO:0031967_0.559|GO:0005740_0.556|GO:0031966_0.556|GO:0005743_0.552|GO:0019866_0.552
|
IPR008699+21-201_24-200+
|
— |
PF05821+24-200+NADH-ubiquinone_oxidoreductase_ASHI_subunit_(CI-ASHI_or_NDUFB8)
|
— |
PTHR12840+21-201+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-226
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.679
|
27585.110
|
7.182
|
3.000
|
31.416
|
21.239
|
44.690
|
55.310
|
17.257
|
14.159
|
42.920
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
92.222
|
15.060
|
21.500
|
18.104
|
25.004
|
22.086
|
287.827
|
271.314
|
21.224
|
139.717
|
88.934
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.717
|
3.512
|
— |
-2.853
|
— |
-2.224
|
— | — |
No JSON data available for plots.