Hg_chrom9_TN10mRNA_17507
Organism: Heterodera glycines Gene Locus: chr9:4517052-4519988 Feature type: polypeptideProtein Sequence
Length: 613
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.29 | 0.721 | 0.682 | 0.844 | 0.979 | 1.255 | 0.583 | 1.387 | 0.979 | 1.852 | 0.742 | 1.631 | 1.314 | 0.627 | 1.265 | 1.375 | 0.588 | 0.717 | 0.753 | 0.672 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16543
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.564
|
0.254
|
0.016
|
0.614
|
0.143
|
0.362
|
0.333
|
0.033
|
0.145
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004950
|
2.000
|
1.000
|
Hsc_gene_18619.t1
|
Hsc_gene_18619.t1
|
— |
O17581.1 Maternal uncoordinated protein 2 [Caenorhabditis elegans]
|
KAI1728310.1 cohesin loading factor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0007064
|
GO:0005575_0.918|GO:0110165_0.915|GO:0005622_0.828|GO:0008150_0.730|GO:0009987_0.679|GO:0016020_0.663|GO:0043226_0.581|GO:0043229_0.572|GO:0071840_0.538|GO:0016043_0.532
|
IPR011990+12-587_19-169_140-457+|IPR019440+11-605_39-558+
|
— |
PF10345+39-558+Cohesin_loading_factor
|
— |
PTHR21394+11-605+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-613
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
68168.790
|
8.525
|
17.500
|
23.491
|
10.767
|
44.698
|
55.302
|
13.866
|
9.625
|
46.493
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
darkorange
|
233.791
|
301.933
|
266.113
|
197.135
|
189.141
|
178.500
|
620.095
|
578.192
|
57.130
|
105.820
|
84.953
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.412
|
-0.752
|
-0.324
|
— | — |
1.808
|
1.591
|
0.245
|
— | — | — | — | — |
No JSON data available for plots.