Hg_chrom9_TN10mRNA_17510
Organism: Heterodera glycines Gene Locus: chr9:4541897-4542670 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 0.537 | 1.538 | 0.265 | 0.641 | 0.986 | 0.916 | 0.769 | 2.222 | 1.247 | 1.166 | 1.81 | 0.427 | 0.888 | 1.57 | 0.989 | 0.757 | 0.583 | 0.592 | 1.357 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16546
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.664
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKYTKDDIGDAKVKREKKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.758
|
0.174
|
0.149
|
0.495
|
0.082
|
0.013
|
0.009
|
0.085
|
0.082
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001418
|
3.000
|
2.000
|
Hsc_gene_13911.t1;Hsc_gene_869.t1
|
— | — |
P40233.2 Casein kinase I homolog 1 [Schizosaccharomyces pombe 972h-]
|
KHN87079.1 Tau-tubulin kinase 1 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.827|GO:0110165_0.827|GO:0005622_0.717|GO:0008150_0.637|GO:0005737_0.625|GO:0003674_0.622|GO:0016020_0.614|GO:0043226_0.608|GO:0043229_0.592|GO:0009987_0.547
|
IPR000719+1-130+|IPR011009+1-118+|IPR050235+1-59+
|
— | — | — |
PTHR11909+1-59+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-130
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
14625.870
|
9.609
|
5.000
|
29.231
|
8.462
|
46.923
|
53.077
|
16.923
|
12.308
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
287.334
|
5.411
|
8.837
|
18.830
|
20.494
|
433.315
|
23.757
|
1855.384
|
0.000
|
369.828
|
211.330
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.659
|
1.192
|
— |
4.414
|
-4.177
|
1.986
|
-6.139
|
-9.301
|
5.092
|
-3.693
|
— | — |
No JSON data available for plots.