Hg_chrom9_TN10mRNA_17511
Organism: Heterodera glycines Gene Locus: chr9:4543164-4544211 Feature type: polypeptideProtein Sequence
Length: 240
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.436 | 0.775 | 0.909 | 0.431 | 1.389 | 0.641 | 0.397 | 1.667 | 0.556 | 0.788 | 0.505 | 1.225 | 1.852 | 2.244 | 1.956 | 0.595 | 0.751 | 1.01 | 1.923 | 2.819 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16547
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.091
|
0.934
|
0.007
|
0.193
|
0.105
|
0.031
|
0.055
|
0.011
|
0.020
|
0.009
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004962
|
2.000
|
1.000
|
Hsc_gene_18566.t1
|
Hsc_gene_18566.t1
|
— | — |
XP_024501614.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8 family-containing protein [Strongyloides ratti];CEF62412.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8 family-containing protein [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005739
|
GO:0005575_0.857|GO:0110165_0.852|GO:0016020_0.799|GO:0005622_0.766|GO:0005737_0.766|GO:0043226_0.733|GO:0043229_0.720|GO:0043227_0.718|GO:0043231_0.708|GO:0031090_0.591|GO:0005739_0.565|GO:0031967_0.559|GO:0005740_0.554|GO:0031966_0.554|GO:0005743_0.551|GO:0019866_0.551
|
IPR008699+21-215_24-214+
|
— |
PF05821+24-214+NADH-ubiquinone_oxidoreductase_ASHI_subunit_(CI-ASHI_or_NDUFB8)
|
— |
PTHR12840+21-215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-240
|
9j6w_B8
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.679
|
29216.010
|
7.156
|
3.000
|
29.583
|
22.083
|
44.167
|
55.833
|
16.250
|
13.333
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
126.175
|
22.956
|
23.085
|
18.859
|
25.834
|
24.498
|
290.475
|
270.790
|
54.555
|
257.414
|
170.474
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
3.581
|
3.360
|
— | — | — |
-3.119
|
— | — |
No JSON data available for plots.