Hg_chrom9_TN10mRNA_17512
Organism: Heterodera glycines Gene Locus: chr9:4544412-4545013 Feature type: polypeptideProtein Sequence
Length: 169
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.826 | 0.963 | 0.861 | 0.204 | 1.381 | 0.607 | 0.704 | 0.888 | 0.789 | 0.8 | 1.793 | 0.696 | 2.301 | 1.821 | 0.966 | 0.507 | 0.776 | 0.986 | 2.276 | 0.696 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16548
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
3-23
|
0.969
|
— | — |
0.000
|
— | — |
0.061
|
0.948
|
0.055
|
0.062
|
0.009
|
0.019
|
0.024
|
0.003
|
0.050
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004963
|
2.000
|
1.000
|
Hsc_gene_18565.t1
|
Hsc_gene_18565.t1
|
— |
P90993.1 Large ribosomal subunit protein mL41 [Caenorhabditis elegans]
|
KAI1707174.1 mitochondrial ribosomal protein l27 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005762
|
GO:0005575_0.908|GO:0110165_0.900|GO:0005622_0.876|GO:0005737_0.841|GO:0043226_0.833|GO:0043229_0.827|GO:0016020_0.820|GO:0043227_0.782|GO:0043231_0.779|GO:0008150_0.660|GO:0005739_0.609|GO:0009987_0.605|GO:0008152_0.563|GO:0044237_0.545|GO:0044238_0.544|GO:0009058_0.536|GO:0044249_0.509|GO:0043170_0.507
|
IPR019189+58-123_60-114+
|
— |
PF09809+58-123+Mitochondrial_ribosomal_protein_L27
|
— |
PTHR21338+60-114+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-169
|
8oiq_Bq
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
19501.410
|
9.934
|
7.500
|
31.361
|
15.385
|
46.154
|
53.846
|
18.343
|
13.018
|
46.746
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
594.341
|
175.190
|
251.201
|
227.659
|
272.075
|
261.672
|
330.718
|
392.645
|
825.999
|
1264.055
|
1076.317
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.291
|
0.241
|
— |
0.226
|
— |
0.349
|
0.480
|
— | — | — | — | — | — |
No JSON data available for plots.