Hg_chrom9_TN10mRNA_17513
Organism: Heterodera glycines Gene Locus: chr9:4545243-4548068 Feature type: polypeptideProtein Sequence
Length: 706
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.807 | 1.515 | 1.03 | 0.684 | 0.779 | 1.126 | 0.725 | 1.416 | 1.259 | 1.493 | 0.687 | 1.083 | 1.889 | 0.708 | 0.983 | 1.234 | 0.673 | 0.88 | 0.872 | 0.833 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16549
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — |
1-24
|
0.977
|
1.000
|
1.000
|
1.000
|
0.224
|
0.050
|
0.069
|
0.329
|
0.553
|
0.583
|
0.466
|
0.045
|
0.414
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004964
|
2.000
|
1.000
|
Hsc_gene_18564.t2
|
Hsc_gene_18564.t1;Hsc_gene_18564.t2
|
— |
Q23316.3 Nicastrin [Caenorhabditis elegans]
|
KAF7639364.1 Ncstrn_small domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016485
|
GO:0008150_0.957|GO:0005575_0.913|GO:0110165_0.911|GO:0009987_0.899|GO:0016020_0.865|GO:0071944_0.820|GO:0005886_0.816|GO:0065007_0.705|GO:0050789_0.693|GO:0005622_0.668|GO:0032501_0.643|GO:0005737_0.627|GO:0032502_0.626|GO:0048856_0.626|GO:0043226_0.623|GO:0043229_0.607|GO:0043227_0.602|GO:0007275_0.597|GO:0048731_0.591|GO:0008152_0.587|GO:0043231_0.585|GO:0044238_0.572|GO:0043170_0.555|GO:0050896_0.545|GO:0050794_0.542|GO:0005773_0.537|GO:0019538_0.536|GO:0012505_0.520|GO:0051716_0.514
|
IPR008710+6-688+|IPR041084+42-215+
|
— |
PF05450+261-462+Nicastrin|PF18266+42-215+Nicastrin_small_lobe
|
— |
PTHR21092+6-688+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-706
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.722
|
79347.310
|
6.743
|
3.000
|
22.521
|
13.598
|
46.176
|
53.824
|
12.181
|
10.340
|
49.433
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
lightgreen
|
116.186
|
93.116
|
74.101
|
56.776
|
61.742
|
77.119
|
304.126
|
255.371
|
11.312
|
153.947
|
92.817
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.558
|
-0.850
|
— | — | — |
1.989
|
1.622
|
0.394
|
-3.932
|
— | — | — | — |