Hg_chrom9_TN10mRNA_17514
Organism: Heterodera glycines Gene Locus: chr9:4552619-4556988 Feature type: polypeptideProtein Sequence
Length: 557
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.939 | 0.543 | 0.457 | 0.619 | 1.616 | 1.289 | 1.111 | 1.167 | 1.117 | 1.431 | 0.68 | 1.479 | 0.997 | 0.863 | 1.722 | 0.923 | 0.795 | 0.762 | 1.795 | 0.317 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16550
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.483
|
0.366
|
0.041
|
0.695
|
0.103
|
0.087
|
0.092
|
0.098
|
0.103
|
0.096
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004965
|
1.000
|
2.000
|
Hsc_gene_18563.t1;Hsc_gene_18563.t2
|
Hsc_gene_18563.t1;Hsc_gene_18563.t2
|
— |
Q8N0W3.2 L-fucose kinase [Homo sapiens]
|
KAI1727436.1 L-fucose kinase [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524
|
GO:0008150_0.940|GO:0009987_0.894|GO:0003674_0.860|GO:0008152_0.775|GO:0044238_0.756|GO:0044237_0.753|GO:0003824_0.716|GO:0006793_0.690|GO:0006796_0.690|GO:0016740_0.679|GO:0016772_0.656|GO:0016301_0.654|GO:0016773_0.650|GO:0050201_0.650|GO:0005575_0.645|GO:0110165_0.642|GO:0005622_0.560
|
IPR006204+302-362+|IPR020568+181-373+|IPR036554+399-524+|IPR052203+178-541+
|
— |
PF00288+302-362+GHMP_kinases_N_terminal_domain
|
— |
PTHR32463+178-541+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-86;545-557
|
1.000
|
87-544
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
62290.340
|
8.192
|
10.500
|
27.469
|
9.336
|
46.140
|
53.860
|
15.260
|
12.208
|
44.883
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1336.346
|
1065.662
|
1184.969
|
339.412
|
158.445
|
780.564
|
1397.126
|
2563.743
|
2618.494
|
1073.921
|
1735.881
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.788
|
-1.695
|
-1.131
|
2.315
|
0.851
|
1.614
|
-0.734
|
— | — | — | — | — |
No JSON data available for plots.