Hg_chrom9_TN10mRNA_17515
Organism: Heterodera glycines Gene Locus: chr9:4558042-4562828 Feature type: polypeptideProtein Sequence
Length: 719
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.695 | 1.067 | 0.936 | 0.528 | 1.066 | 2.068 | 0.513 | 1.53 | 1.113 | 1.579 | 0.759 | 1.8 | 1.198 | 0.722 | 0.908 | 1.311 | 0.889 | 0.906 | 1.391 | 0.368 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16551
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — |
10-50
|
0.981
|
— | — |
0.000
|
— | — |
0.704
|
0.181
|
0.004
|
0.608
|
0.130
|
0.175
|
0.103
|
0.009
|
0.201
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012924
|
1.000
|
1.000
|
Hsc_gene_18562.t1
|
Hsc_gene_18562.t1
|
— |
Q9NAD6.2 Signal transducer and activator of transcription 1 [Caenorhabditis elegans]
|
KAI1706296.1 STAT protein, DNA binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003700|GO:0006355|GO:0007165
|
GO:0008150_0.964|GO:0009987_0.929|GO:0005575_0.903|GO:0110165_0.901|GO:0065007_0.894|GO:0050789_0.882|GO:0050794_0.868|GO:0005622_0.848|GO:0003674_0.829|GO:0005488_0.788|GO:0016020_0.770|GO:0008152_0.766|GO:0005737_0.765|GO:0044238_0.758|GO:0043170_0.752|GO:0044237_0.743|GO:0009058_0.741|GO:0019222_0.741|GO:0031323_0.732|GO:0009059_0.730|GO:0044249_0.730|GO:0060255_0.729|GO:0080090_0.725|GO:0043226_0.723|GO:0032501_0.722|GO:0010467_0.714|GO:0009889_0.713|GO:0006139_0.711|GO:0031326_0.708|GO:0010556_0.703|GO:0010468_0.702|GO:0048518_0.702|GO:0034654_0.701|GO:0090304_0.700|GO:0141187_0.696|GO:0043229_0.694|GO:0032502_0.693|GO:0048856_0.693|GO:0016070_0.692|GO:0032774_0.689|GO:0019219_0.688|GO:0006351_0.684|GO:0051252_0.683|GO:0006355_0.677|GO:2001141_0.677|GO:0043227_0.673|GO:0097159_0.673|GO:0048522_0.657|GO:0003676_0.656|GO:0003677_0.647|GO:0043231_0.647|GO:0043565_0.647|GO:0050896_0.642|GO:0051716_0.620|GO:0009893_0.608|GO:0010604_0.593|GO:0023052_0.590|GO:0007154_0.589|GO:0006366_0.586|GO:0007165_0.571|GO:0031325_0.570|GO:0007275_0.569|GO:0009891_0.561|GO:0031328_0.560|GO:0010557_0.556|GO:0042221_0.551|GO:0005634_0.546|GO:0007166_0.506|GO:0006357_0.501
|
IPR000980+500-561_500-577+|IPR001217+32-618+|IPR008967+222-490+|IPR012345+231-381+|IPR013800+46-215+|IPR013801+235-379+|IPR015988+39-230+|IPR036860+492-617_505-618+|IPR048988+412-481+
|
— |
PF00017+500-561+SH2_domain|PF01017+46-215+STAT_protein,_all-alpha_domain|PF02864+235-379+STAT_protein,_DNA_binding_domain|PF21354+412-481+Signal_transducer_and_activator_of_transcription,_linker_domain
|
G3DSA:1.10.238.10:FF:000493+382-504+Signal_transducer_and_activator_of_transcription
|
PTHR11801+32-618+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39;713-719
|
1.000
|
40-712
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.535
|
81493.820
|
6.208
|
-4.000
|
24.061
|
10.431
|
51.321
|
48.679
|
12.517
|
11.544
|
45.897
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
2161.732
|
6449.742
|
2388.053
|
1011.433
|
393.726
|
397.308
|
333.040
|
1372.998
|
492.278
|
4458.507
|
2758.695
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.664
|
-2.810
|
-1.130
|
-1.392
|
— |
-0.244
|
1.688
|
-1.903
|
-3.283
|
— |
-3.009
|
— | — |
No JSON data available for plots.