Hg_chrom9_TN10mRNA_17517
Organism: Heterodera glycines Gene Locus: chr9:4570285-4575208 Feature type: polypeptideProtein Sequence
Length: 947
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 1.203 | 1.056 | 0.619 | 1.162 | 1.002 | 0.616 | 1.637 | 1.431 | 1.627 | 0.672 | 1.118 | 1.173 | 0.772 | 1.358 | 1.101 | 0.537 | 0.976 | 0.65 | 0.839 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16553
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
RKNEHYKLDVALEVCRKRD
|
30-56
|
0.973
|
— | — | — | — |
0.000
|
— | — |
0.354
|
0.135
|
0.049
|
0.379
|
0.204
|
0.659
|
0.326
|
0.019
|
0.104
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012926
|
1.000
|
1.000
|
Hsc_gene_18559.t1
|
Hsc_gene_18559.t1
|
— |
Q19954.4 Vacuolar protein sorting-associated protein 41 homolog [Caenorhabditis elegans]
|
KHN74077.1 Vacuolar protein sorting-associated protein 41 -like protein [Toxocara canis]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006623|GO:0006886|GO:0016192
|
GO:0005575_0.890|GO:0110165_0.890|GO:0005622_0.838|GO:0008150_0.787|GO:0009987_0.730|GO:0016020_0.665|GO:0005737_0.602|GO:0051179_0.577|GO:0051234_0.565|GO:0006810_0.562|GO:0043226_0.562|GO:0043229_0.542|GO:0051641_0.542|GO:0051649_0.526|GO:0046907_0.518|GO:0043227_0.509|GO:0007034_0.502
|
IPR000547+674-813_676-805+|IPR011990+702-865+|IPR015943+37-271+|IPR036322+50-262+|IPR045111+13-263+
|
SM00299+674-813+
|
PF00637+676-805+Region_in_Clathrin_and_VPS
|
— |
PTHR12616+13-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;933-947
|
1.000
|
19-932
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
107162.490
|
6.481
|
-0.500
|
27.138
|
11.193
|
47.202
|
52.798
|
14.361
|
12.777
|
46.463
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
salmon
|
1344.542
|
1626.320
|
1631.553
|
1369.008
|
1289.731
|
1101.950
|
1507.419
|
1226.284
|
715.043
|
1688.989
|
1271.584
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.225
|
-0.386
|
-0.144
|
-0.118
|
-0.212
|
0.462
|
— |
0.440
|
— | — | — | — | — |
No JSON data available for plots.