SCN Proteipedia

Hg_chrom9_TN10mRNA_17521

Organism: Heterodera glycines Gene Locus: chr9:4585754-4589523 Feature type: polypeptide

Protein Sequence

Length: 823

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.918	1.893	0.685	0.377	1.58	1.994	0.709	1.883	0.513	0.805	1.013	1.858	0.844	1.075	1.19	1.059	1.235	0.405	0.467	0.393	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16557	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.993

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRK,RRRR,QRHKRGEGRKEDEEK,KRGEGRKEDEEKRDNKR	—	—	10-42	0.821	—	—	0.000	—	—	0.916	0.097	0.009	0.223	0.021	0.024	0.031	0.055	0.058	0.037

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012929	1.000	1.000	Hsc_gene_18555.t1	Hsc_gene_18555.t1	—	O93307.1 Homeobox protein SIX6 [Gallus gallus]	XP_026878312.2 SIX homeobox 7 [Electrophorus electricus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677	GO:0008150_0.860\|GO:0009987_0.797\|GO:0003674_0.750\|GO:0005488_0.750\|GO:0065007_0.727\|GO:0050789_0.724\|GO:0050794_0.715\|GO:0032502_0.706\|GO:0048856_0.706\|GO:0005575_0.687\|GO:0110165_0.687\|GO:0032501_0.674\|GO:0003676_0.648\|GO:0007275_0.648\|GO:0097159_0.648\|GO:0005622_0.635\|GO:0043226_0.619\|GO:0043229_0.616\|GO:0008152_0.604\|GO:0043170_0.604\|GO:0048731_0.603\|GO:0019222_0.599\|GO:0031323_0.599\|GO:0044237_0.599\|GO:0016020_0.597\|GO:0009058_0.596\|GO:0009059_0.596\|GO:0044249_0.596\|GO:0010467_0.595\|GO:0060255_0.594\|GO:0044238_0.592\|GO:0080090_0.592\|GO:0003677_0.584\|GO:0006139_0.584\|GO:0034654_0.584\|GO:0090304_0.584\|GO:0141187_0.584\|GO:0009889_0.580\|GO:0010556_0.580\|GO:0031326_0.580\|GO:0043565_0.578\|GO:0016070_0.577\|GO:0032774_0.576\|GO:0010468_0.568\|GO:0019219_0.568\|GO:0051252_0.563\|GO:0006351_0.552\|GO:0030154_0.547\|GO:0048869_0.547\|GO:0006355_0.544\|GO:2001141_0.544\|GO:0043227_0.532\|GO:0005634_0.530\|GO:0043231_0.530\|GO:0003690_0.511\|GO:1990837_0.511\|GO:0048513_0.505	IPR001356+501-561_504-565_505-559_508-559+\|IPR009057+501-567+\|IPR031701+388-498+	SM00389+504-565+	PF00046+508-559+Homeodomain\|PF16878+388-498+Transcriptional_regulator,_SIX1,_N-terminal_SD_domain	G3DSA:1.10.10.60:FF:000046+503-567+SIX_homeobox_3	PTHR10390+298-747+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-365;510-823	1.000	366-509	4egc_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.798	92383.790	7.075	9.500	29.526	8.748	60.389	39.611	16.282	13.244	50.061

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	510.346	640.835	1105.755	654.632	237.280	146.104	475.885	395.493	159.415	742.210	492.440

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.558	—	-0.648	-1.495	-0.685	1.714	1.333	0.409	—	—	—	—	—

No JSON data available for plots.

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