SCN Proteipedia

Hg_chrom9_TN10mRNA_17523

Organism: Heterodera glycines Gene Locus: chr9:4603671-4614233 Feature type: polypeptide

Protein Sequence

Length: 1,759

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.833	1.256	0.817	0.588	0.91	1.706	0.724	2.018	0.96	1.152	0.594	1.572	1.011	1.148	1.357	1.657	0.671	0.801	0.569	0.468	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16559	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	44-65	0.958	—	—	—	—	0.000	—	—	0.238	0.197	0.030	0.632	0.157	0.285	0.202	0.040	0.546	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012931	1.000	1.000	Hsc_gene_18552.t1	Hsc_gene_18552.t1	—	G5EDB9.1 Rap guanine nucleotide exchange factor [Caenorhabditis elegans]	KAI1725013.1 rasGEF domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005085\|GO:0005515\|GO:0007165\|GO:0007264	GO:0005575_0.855\|GO:0110165_0.851\|GO:0008150_0.814\|GO:0003674_0.764\|GO:0005488_0.730\|GO:0009987_0.662\|GO:0065007_0.656\|GO:0050789_0.647\|GO:0050794_0.641\|GO:0005622_0.633\|GO:0005515_0.620\|GO:0032502_0.597\|GO:0048856_0.597\|GO:0016020_0.581\|GO:0050896_0.557\|GO:0032501_0.555\|GO:0007275_0.508\|GO:0051716_0.508	IPR000159+1226-1314_1230-1314+\|IPR000595+35-80_35-127_677-777_678-777+\|IPR000651+799-925_799-928_807-924+\|IPR001478+928-1005_929-997_939-1006+\|IPR001895+1337-1551_1337-1634_1341-1579_1345-1533+\|IPR008937+527-1633+\|IPR014710+7-134_622-796+\|IPR018490+15-129_655-781+\|IPR023578+798-1656+\|IPR036034+918-1007_929-1007+\|IPR036964+1331-1633+\|IPR041489+953-1004+	SM00147+1337-1634+\|SM00228+939-1006+\|SM00229+799-925+\|SM00314+1226-1314+	PF00617+1345-1533+RasGEF_domain\|PF17820+953-1004+PDZ_domain	—	PTHR23113+527-1633+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	126-659;1018-1110;1630-1759	3.000	1-125;660-1017;1111-1629	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.897	194955.050	8.251	46.500	24.559	10.006	52.302	47.698	14.611	9.949	51.791

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	greenyellow	2178.675	2126.473	1859.348	1415.873	1446.859	1897.745	2911.606	1874.039	1778.203	3123.573	2546.986

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.423	-0.724	-0.284	—	0.406	0.628	—	0.779	—	—	—	—	—

No JSON data available for plots.

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