Hg_chrom9_TN10mRNA_17528
Organism: Heterodera glycines Gene Locus: chr9:4636355-4641453 Feature type: polypeptideProtein Sequence
Length: 451
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.902 | 1.805 | 0.403 | 0.459 | 0.85 | 2.388 | 0.977 | 1.109 | 1.035 | 0.839 | 0.806 | 1.304 | 1.17 | 1.194 | 1.358 | 1.52 | 0.618 | 0.773 | 0.341 | 0.196 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16564
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.779
|
0.093
|
0.010
|
0.320
|
0.037
|
0.029
|
0.044
|
0.025
|
0.058
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012934
|
1.000
|
1.000
|
Hsc_gene_18548.t1
|
Hsc_gene_18548.t1;Hsc_gene_18548.t2
|
— |
G5ED66.1 Paired box protein 3 homolog [Caenorhabditis elegans]
|
KAI1720321.1 Paired box domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0006355
|
GO:0008150_0.962|GO:0005575_0.826|GO:0009987_0.825|GO:0032502_0.824|GO:0048856_0.824|GO:0110165_0.818|GO:0005622_0.790|GO:0043226_0.778|GO:0043229_0.778|GO:0032501_0.730|GO:0065007_0.715|GO:0050789_0.711|GO:0050794_0.701|GO:0003674_0.688|GO:0003676_0.688|GO:0005488_0.688|GO:0097159_0.688|GO:0016020_0.679|GO:0007275_0.677|GO:0043227_0.636|GO:0003677_0.635|GO:0043231_0.625|GO:0005634_0.621|GO:0048513_0.609|GO:0043565_0.607|GO:0003690_0.602|GO:0009653_0.590|GO:1990837_0.580|GO:0008152_0.579|GO:0019222_0.579|GO:0031323_0.576|GO:0044237_0.576|GO:0009058_0.575|GO:0009059_0.575|GO:0010467_0.575|GO:0043170_0.575|GO:0044249_0.575|GO:0044238_0.572|GO:0060255_0.572|GO:0080090_0.572|GO:0009889_0.566|GO:0010556_0.566|GO:0031326_0.566|GO:0006139_0.564|GO:0016070_0.564|GO:0090304_0.564|GO:0034654_0.561|GO:0032774_0.560|GO:0141187_0.560|GO:0010468_0.557|GO:0019219_0.557|GO:0051252_0.557|GO:0006351_0.552|GO:0048731_0.544|GO:2001141_0.541|GO:0006355_0.540|GO:0030154_0.539|GO:0048869_0.539|GO:0000976_0.508|GO:0001067_0.508
|
IPR001356+282-342_284-346_285-336_285-341+|IPR001523+55-180_55-182_59-74_77-95_97-114_115-132+|IPR009057+57-181_271-342+|IPR036388+55-123_124-182+|IPR043565+52-421+
|
SM00351+55-180+|SM00389+284-346+
|
PF00046+285-341+Homeodomain|PF00292+55-180+'Paired_box'_domain
|
— |
PTHR45636+52-421+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-51;170-451
|
1.000
|
52-169
|
1pdn_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.962
|
49277.310
|
10.734
|
26.000
|
21.508
|
7.539
|
52.993
|
47.007
|
14.191
|
7.317
|
52.993
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
23.672
|
27.328
|
24.930
|
21.198
|
10.113
|
9.971
|
33.365
|
10.055
|
54.908
|
11.023
|
29.831
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-1.105
|
— |
1.755
|
— |
1.873
|
— | — | — | — | — |
No JSON data available for plots.