Hg_chrom9_TN10mRNA_17529
Organism: Heterodera glycines Gene Locus: chr9:4642976-4644741 Feature type: polypeptideProtein Sequence
Length: 334
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.218 | 0.766 | 0.653 | 0.619 | 1.198 | 0.768 | 0.962 | 0.898 | 1.464 | 1.295 | 0.953 | 1.057 | 1.497 | 0.576 | 1.894 | 0.813 | 0.736 | 0.817 | 1.612 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16565
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.624
|
0.413
|
0.041
|
0.336
|
0.069
|
0.123
|
0.097
|
0.162
|
0.140
|
0.197
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012935
|
1.000
|
1.000
|
Hsc_gene_18547.t3
|
Hsc_gene_18547.t1;Hsc_gene_18547.t3
|
— |
O17731.1 Thialysine N-epsilon-acetyltransferase [Caenorhabditis elegans]
|
CAA9287957.1 Histone acetyltransferase HPA2 and related acetyltransferases [uncultured Coleofasciculus sp.]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016747
|
GO:0003674_0.671|GO:0005575_0.649|GO:0110165_0.646|GO:0008150_0.615|GO:0003824_0.559|GO:0005622_0.506
|
IPR000182+4-159_53-137_173-334_210-295+|IPR016181+6-148_195-303+|IPR051016+2-161+
|
— |
PF00583+53-137_210-295+Acetyltransferase_(GNAT)_family
|
— |
PTHR10545+2-161+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
331-334
|
1.000
|
1-330
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
37467.360
|
10.415
|
19.000
|
28.144
|
10.479
|
44.611
|
55.389
|
17.365
|
10.778
|
45.808
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
960.527
|
594.863
|
931.525
|
1170.967
|
655.007
|
664.738
|
550.268
|
2830.802
|
477.467
|
1069.890
|
815.994
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.418
|
0.840
|
0.439
|
-0.871
|
— |
-0.262
|
1.990
|
-2.222
|
— | — | — | — | — |
No JSON data available for plots.