Hg_chrom9_TN10mRNA_17530
Organism: Heterodera glycines Gene Locus: chr9:4645231-4648468 Feature type: polypeptideProtein Sequence
Length: 662
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 1.265 | 0.687 | 0.833 | 0.806 | 0.697 | 0.683 | 0.453 | 0.973 | 1.633 | 0.618 | 1.599 | 2.224 | 0.959 | 0.956 | 1.273 | 0.817 | 1.144 | 1.162 | 1.022 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16566
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.901
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
chloroplast
|
KRSR
|
— | — |
13-42
|
0.960
|
1-24
|
0.969
|
1.000
|
9.000
|
9.000
|
0.146
|
0.051
|
0.018
|
0.135
|
0.599
|
0.494
|
0.603
|
0.001
|
0.348
|
0.011
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004966
|
1.000
|
2.000
|
Hsc_gene_18547.t1;Hsc_gene_18547.t2
|
Hsc_gene_18547.t1;Hsc_gene_18547.t2
|
— |
Q8TCT7.2 Signal peptide peptidase-like 2B [Homo sapiens]
|
KAI1716790.1 signal peptide peptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0042500
|
GO:0005575_0.902|GO:0110165_0.901|GO:0016020_0.870|GO:0071944_0.831|GO:0005886_0.821|GO:0005622_0.758|GO:0043226_0.754|GO:0005737_0.750|GO:0043229_0.731|GO:0043227_0.725|GO:0043231_0.717|GO:0008150_0.713|GO:0005773_0.694|GO:0012505_0.650|GO:0003674_0.558|GO:0009987_0.525
|
IPR006639+290-648+|IPR007369+186-660_283-658+
|
SM00730+290-648+
|
PF04258+283-658+Signal_peptide_peptidase
|
— |
PTHR12174+186-660+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-662
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
74330.060
|
7.404
|
4.000
|
18.278
|
13.897
|
40.332
|
59.668
|
9.668
|
8.610
|
50.604
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
tan
|
1095.134
|
807.857
|
1363.913
|
1514.210
|
751.139
|
953.362
|
1372.380
|
2819.264
|
1217.470
|
284.809
|
684.521
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
0.769
|
0.260
|
-1.043
|
0.358
|
0.534
|
1.460
|
-0.898
|
— | — | — | — | — |