Hg_chrom9_TN10mRNA_17531
Organism: Heterodera glycines Gene Locus: chr9:4649202-4653064 Feature type: polypeptideProtein Sequence
Length: 430
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.892 | 1.298 | 1.099 | 0.321 | 1.085 | 1.491 | 0.831 | 1.163 | 0.568 | 1.414 | 1.057 | 0.958 | 1.098 | 1.163 | 1.044 | 1.229 | 0.724 | 0.669 | 0.894 | 0.821 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16567
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRPRTAANFSGKLKKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.354
|
0.112
|
0.005
|
0.682
|
0.096
|
0.239
|
0.214
|
0.086
|
0.071
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003846
|
2.000
|
1.000
|
Hsc_gene_18546.t2
|
Hsc_gene_18546.t1;Hsc_gene_18546.t2
|
— |
P34438.2 Uncharacterized protein F44E2.8 [Caenorhabditis elegans]
|
KAF7633120.1 DUF1768 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR012816+188-368_197-371+|IPR037238+182-372_182-378+
|
— |
PF08719+197-371+NADAR_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-168;391-430
|
1.000
|
169-390
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.813
|
47887.680
|
7.016
|
3.000
|
26.977
|
10.233
|
51.395
|
48.605
|
14.419
|
12.558
|
50.698
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2061.966
|
1017.669
|
1664.515
|
2390.616
|
2580.692
|
2158.758
|
2278.669
|
1230.452
|
1732.682
|
2726.076
|
2300.336
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.480
|
1.095
|
0.631
|
— |
-0.242
|
— |
-0.913
|
1.030
|
— | — | — | — | — |
No JSON data available for plots.