SCN Proteipedia

Hg_chrom9_TN10mRNA_17532

Organism: Heterodera glycines Gene Locus: chr9:4653537-4654975 Feature type: polypeptide

Protein Sequence

Length: 350

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.698	1.063	0.883	0.788	1.048	1.758	0.578	1.857	1.016	1.12	0.476	1.345	0.873	0.879	2.391	0.612	1.265	0.866	1.319	1.008	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16568	—	—	1.222	1.000	1.000	1.000	1.000	3.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RSGKRRQ	—	—	—	—	—	—	0.000	—	—	0.256	0.362	0.006	0.756	0.081	0.200	0.141	0.019	0.304	0.318

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0012936	1.000	1.000	Hsc_gene_14021.t1	Hsc_gene_11216.t1;Hsc_gene_14021.t1;Hsc_gene_18543.t1;Hsc_gene_18545.t1;Hsc_gene_19582.t1;Hsc_gene_25914.t1;Hsc_gene_4095.t1;Hsc_gene_4095.t2	—	Q06180.2 Tyrosine-protein phosphatase non-receptor type 2 [Mus musculus]	KAI6231589.1 Receptor-type tyrosine-protein phosphatase epsilon [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004725\|GO:0006470\|GO:0016311	GO:0008150_0.887\|GO:0003674_0.843\|GO:0009987_0.811\|GO:0005575_0.784\|GO:0110165_0.777\|GO:0003824_0.717\|GO:0016020_0.681\|GO:0008152_0.679\|GO:0065007_0.667\|GO:0140096_0.660\|GO:0044237_0.654\|GO:0043170_0.651\|GO:0016787_0.639\|GO:0044238_0.639\|GO:0050789_0.635\|GO:0016788_0.618\|GO:0005622_0.616\|GO:0050794_0.615\|GO:0042578_0.604\|GO:0016791_0.603\|GO:0005488_0.601\|GO:0004721_0.599\|GO:0019538_0.574\|GO:0004725_0.573\|GO:0043412_0.546\|GO:0036211_0.542\|GO:0050896_0.541\|GO:0006793_0.537\|GO:0006796_0.537\|GO:0005515_0.531\|GO:0071944_0.524\|GO:0032501_0.523\|GO:0005886_0.509\|GO:0043226_0.509	IPR000242+75-323_76-321_99-319_121-128_136-156_223-240_257-275_288-303_304-314+\|IPR000387+259-312+\|IPR003595+224-320+\|IPR016130+260-270+\|IPR029021+46-329_71-328+\|IPR052782+26-345+	SM00194+75-323+\|SM00404+224-320+	PF00102+99-319+Protein-tyrosine_phosphatase	—	PTHR46163+26-345+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-60	1.000	61-350	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.710	41008.520	9.723	19.500	29.714	12.000	53.143	46.857	18.571	11.143	44.857

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	5679.971	7637.845	2163.115	778.318	1371.482	15750.111	508.534	26807.555	356.802	3950.911	2410.579

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.050	-3.432	-1.365	0.786	3.536	-4.944	0.655	-5.575	-3.591	—	—	—	—

No JSON data available for plots.

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