Hg_chrom9_TN10mRNA_17535
Organism: Heterodera glycines Gene Locus: chr9:4658126-4660726 Feature type: polypeptideProtein Sequence
Length: 306
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 1.292 | 0.951 | 0.113 | 0.436 | 1.341 | 0.778 | 1.144 | 1.743 | 1.766 | 0.396 | 1.922 | 1.997 | 0.44 | 0.667 | 1.167 | 0.536 | 1.386 | 0.754 | 1.153 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16570
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.729
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.151
|
0.145
|
0.024
|
0.168
|
0.496
|
0.724
|
0.681
|
0.019
|
0.239
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0012939
|
1.000
|
1.000
|
Hsc_gene_18541.t1
|
Hsc_gene_18541.t1
|
— |
Q11080.2 Transmembrane BAX inhibitor motif-containing protein 4 [Caenorhabditis elegans]
|
KAH7701922.1 Protein TMBI-4 [Aphelenchus avenae]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.877|GO:0009987_0.791|GO:0005575_0.712|GO:0110165_0.712|GO:0016020_0.703|GO:0071944_0.622|GO:0005886_0.616|GO:0065007_0.558|GO:0050789_0.540|GO:0005622_0.525|GO:0005737_0.525|GO:0050896_0.521|GO:0005773_0.514|GO:0043226_0.514|GO:0043227_0.514|GO:0043229_0.514|GO:0043231_0.514|GO:0051716_0.507
|
IPR006214+88-300_101-300+
|
— |
PF01027+101-300+Inhibitor_of_apoptosis-promoting_Bax1
|
— |
PTHR23291+88-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-42
|
1.000
|
43-306
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
34189.680
|
5.856
|
-2.500
|
16.013
|
14.379
|
38.235
|
61.765
|
8.170
|
7.843
|
47.712
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1336.345
|
1604.102
|
1267.806
|
995.541
|
1111.986
|
1473.818
|
1259.374
|
1532.298
|
1227.330
|
1459.163
|
1359.806
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.569
|
-0.825
|
-0.240
|
0.128
|
0.421
|
-0.218
|
— | — | — | — | — | — | — |
No JSON data available for plots.